Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq49 107 2e-18 seq34 105 8e-18 seq45 89.7 6e-13 >seq49 Length=1681262 Score = 107 bits (118), Expect = 2e-18 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| ||||| ||||||||||||| |||||||||| | | Sbjct 830170 CCCCAGCACATGATCATGCGCGTCGCCCTCGGCATCCACGGCACAGACATTGATGCGGCT 830111 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||||||| ||||||||| ||| |||| ||||| |||||||||||||| Sbjct 830110 ATCGAGACATACAGTTTCATGTCCCAAAAATAT-TTCACACACGCGACACCAACCCTCTT 830052 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCT 75368 ||| ||||||||| | || ||| | ||||| |||| Sbjct 830051 CAACGCTGGTACAAACCGTCCTCAGCTCTCCAGCTGCT 830014 >seq34 Length=2752318 Score = 105 bits (116), Expect = 8e-18 Identities = 261/395 (66%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 177574 ACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATG 177633 |||| ||| ||||| ||||| || | ||| | || || | || ||||| || |||||| Sbjct 1903855 ACAGTGTGGGTCTCACCCGTAGCCAGGACAAAGTCCTCGGGCTGGTCTTGCTGGAGCATG 1903796 Query 177634 AGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTC---TGGCAGCGTTGAGG 177690 |||||||| | || || ||||| ||||||||||| || | ||||| | || Sbjct 1903795 AGCCACATACCCTCGACGTAGTCACGAGCATGACCCCAATCACGCTTGGCATCAATG--- 1903739 Query 177691 TTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTGTTTGACGCCATCAGTAATC 177750 ||||| || | || | ||| ||| || | |||| | | ||| Sbjct 1903738 TTACCAAGGTAGAGACAGTCTTGACGACCAAGATGGATATCAGCGACGGCGCGGGAGATC 1903679 Query 177751 TTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAG 177810 || ||||||||| | || || | || || ||||||||||||||||| ||| | Sbjct 1903678 TTGCGGGTGACAAAGGTGCGGCCACGGCGGGGGGACTCGTGGTTGAAGAGGATACCGTTG 1903619 Query 177811 CAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAATTTG 177870 ||||| ||||| ||||||| || ||||| || | || ||||| | || | ||| Sbjct 1903618 CAGGCGTACATGTCATAGGACTCACGGTAGTTAACGGTGATCCAGTAACCGTAGAGCTTG 1903559 Query 177871 GAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGTTTCTCGG 177930 | || |||||| || || |||||||| || || ||| | || ||||| || | Sbjct 1903558 GCAACACCATAGGGCGAGCGGGGGTAGAAAGGCGTGGTCTCCTTCTGGGGAGTCTCGACG 1903499 Query 177931 ACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 || ||||| | | ||| || || ||||| ||||| Sbjct 1903498 ACCTTACCGTAAAGCTCGGAGGTCGAGGCCTGGTA 1903464 >seq45 Length=2374188 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/222 (69%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC 65067 || || || || |||||||||| |||||||| | || ||| | | |||| || Sbjct 1436110 GTTCCCTGCATCAAGAAGAAGGCCGAATGGGCATTCAAGTGGATCTCCTCAAA----CGG 1436165 Query 65068 TCC-TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 | || || ||||| | |||| ||||| ||||||||||||||||||||| || || Sbjct 1436166 TGTGTTTGCTGAGCGTTTGGTTGCTTTTGCTGCTGTGGAGGGTATCTTCTTCTCTGGCTC 1436225 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 || | | || | |||| | |||||||| ||||| ||||| || || ||| || Sbjct 1436226 GTTTGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTGACTTTCAGCAA 1436285 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || || || || || || ||||||||| || ||||| Sbjct 1436286 CGAGCTCATCTCGCGTGACGAAGGTCTCCACACCGACTTTGC 1436327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569234601120