Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq47 104 4e-17 >seq47 Length=1968370 Score = 104 bits (114), Expect = 4e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| ||||| || | ||| || |||||| ||||| || || || | Sbjct 80622 CGCAGGACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGACAAAGTCCGTCCG 80681 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || ||||| || | | |||||| ||||| || || ||||||||| Sbjct 80682 TCCTCGAGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGAATGCCTTCTTTA 80741 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| ||| | ||| || ||||| || || || || |||| |||||| Sbjct 80742 TCCTGGATCTTGGCTTTCACATTATCGATCGTATCAGATGATTCGACCTCTAATGTTATA 80801 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| | || || ||||| |||||||| Sbjct 80802 GTCTTGCCTGTCAAGGTCTTGACAAAAATTTGCAT 80836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899653848961680