Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq23 100 6e-16 seq47 95.1 2e-14 >seq23 Length=2864373 Score = 100 bits (110), Expect = 6e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || | ||| | ||| | ||| || ||| || ||||| Sbjct 1571573 ATACCACCACGGAGACGGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCG 1571514 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| ||||| || || ||||||||||| | | ||| ||||| || Sbjct 1571513 GAGAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGA 1571454 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || | || || || ||||| || || || || Sbjct 1571453 GGAATGCCCTCCTTGTCTTGAATCTTCTGCTTGACGTTCTCGATAGAGTCGGAAGACTCG 1571394 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| ||||| ||||| || || || | || || | || |||||||| || Sbjct 1571393 ACTTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGTT 1571341 >seq47 Length=1968370 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCG 192377 ||||| | || ||||| | || | ||| ||| || ||||| || || || || || || Sbjct 80619 AGACGCAGGACCAAATGCAGCGTGGACTCCTTTTGA-ATATTGTAGTCCGACAAAGTCCG 80677 Query 192378 TTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTC 192437 | | || || | || || || |||||||| | | |||||| ||||| || || ||||| Sbjct 80678 TCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGAATGCCTTC 80737 Query 192438 TTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGT 192497 |||||| || || || ||| |||||| || | ||| || ||||| || |||| || Sbjct 80738 TTTATCCTGGATCTTGGCTTTCACATTATCGATCGTATCAGATGATTCGACCTCTAATGT 80797 Query 192498 AATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || || | ||| || ||||| Sbjct 80798 TATAGTCTTGCCTGTCAAGGTCTTGACAAAAATTTGCAT 80836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479381931150