Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 132 1e-25 seq45 89.7 2e-12 >seq3 Length=1474401 Score = 132 bits (146), Expect = 1e-25 Identities = 187/260 (72%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || |||||||| ||| || || || |||| ||| ||||| || |||||| | || Sbjct 1050193 GCCATCAGACCACAGATATCGCAGACGTGCACGCGGTAGGCATCCGACGCGTCAAAGAGA 1050134 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 || |||| ||| | | ||||||| || ||||| || ||||||||||| |||||| Sbjct 1050133 CGCTCCTTCAAGAACTGGGCCACACCGTGGGAGATCATGCAGTCACGCTCCATCTCACCG 1050074 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GATT--AACC 251580 ||||| ||||||||||| || | | ||||||| | || || || || | |||| ||| Sbjct 1050073 AAACGGAGACCACCATCACGCGAACGACCCTCGACGGGTTGTCGGGTCAGGATTTGGACC 1050014 Query 251581 ATAGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 ||||| | ||||| || ||| || | ||||||||||| ||||||||||| Sbjct 1050013 ---GGACCACGCGCACGGCTGTGAATCTTGTCGTCCACCATATGCTTCAGACGCTGGTAA 1049957 Query 251641 AATGCGGGACCGATGAAGAT 251660 | | ||| |||| ||||| Sbjct 1049956 TACGTGGGGCCGACAAAGAT 1049937 >seq45 Length=2374188 Score = 89.7 bits (98), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||| || || || ||||| | || ||||| | || |||||| || ||| | Sbjct 1436111 TTCCCTGCATCAAGAAGAAGGCCGAATGGGCATTCAAGTGGATCTCCTCAAACGGTGTG- 1436169 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||||| ||| | ||||||||||||| || ||||| || || ||| ||| ||| Sbjct 1436170 --TTTGCTGAGCGTTTGGTTGCTTTTGCTGCTGTGGAGGGTATCTTCTTCTCTGGCTCGT 1436227 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 | ||| || |||||||| || ||||||||| | | ||||| ||| ||| |||| Sbjct 1436228 TTGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTGACTTTCAGCAACG 1436287 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 | || || || | ||||| | || |||||||| ||||| Sbjct 1436288 AGCTCATCTCGCGTGACGAAGGTCTCCACACCGACTTTGC 1436327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816675974513