Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq45 165 1e-34 seq47 136 5e-26 seq23 131 2e-24 seq12 122 1e-21 seq49 104 3e-16 seq1 104 3e-16 >seq45 Length=2374188 Score = 165 bits (182), Expect = 1e-34 Identities = 171/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 868709 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 868768 || ||| ||| || |||||||||||||||| ||| ||||||| ||||| | ||| Sbjct 1436606 ACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATAAAGTCGAAG 1436547 Query 868769 GGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACA 868828 ||||||| | ||||||| ||| ||| |||||||| |||| || ||||| |||||| Sbjct 1436546 GGGTTGGTAGCCTTGTAGAACTTGTCGATGCCGAGCGAGACGAGGAGACGGTCAGCGACA 1436487 Query 868829 AACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGAC 868888 ||||| ||||| ||||||||||| |||||||||||||| || || || |||| | Sbjct 1436486 AACTCAATGTATTGGCACATGAGAGTCGCGTTCATGCCGATCAGAGCGACGGGCAAAGCG 1436427 Query 868889 TCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 | ||| ||||| || ||||||||||| |||||| |||||| Sbjct 1436426 GTGGTCAGGAACTCCTTTTCGATCTCGACTGCCTCGCGGATGAT 1436383 Score = 87.8 bits (96), Expect = 2e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| || ||| | |||||||| || | || || ||||| || || ||||| Sbjct 1436310 ACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAGACCAGGCATCAGACCACGCTT 1436251 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||||||||||| | || ||| ||||| ||||| ||||| || || ||||| Sbjct 1436250 CTTGAGCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAAGATACCCTCCACAGCAGCAAA 1436191 Query 869299 GCCGATGAGCCGCTCGGCAAA 869319 | | | ||||| ||||| Sbjct 1436190 AGCAACCAAACGCTCAGCAAA 1436170 >seq47 Length=1968370 Score = 136 bits (150), Expect = 5e-26 Identities = 188/263 (71%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || ||||| ||||| ||||||| || | ||||||||||| ||||||| ||||||||| Sbjct 706496 TGATCGACATAGCGAGCCGTGTTATTGTAAACGCGGAGCATAGGCACGATGCCGTTGGAA 706555 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | || ||||| || || | ||| | ||||| || || | || ||| | | ||| Sbjct 706556 TAACCATTGGTACCAGCGATGTACGAGCCGGAAGCCCGGATCTGGTGGATGTTGAGACCG 706615 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| || || | |||||| || | | ||| ||| || || || |||||||| || Sbjct 706616 ATGCCACCCGCGGTCTTGGAAATTTGGGAGCAAATTTTCAGAGTTTCATAGATGCCTTCA 706675 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||| || |||||||| || | |||||| ||||| ||||| | | || ||| Sbjct 706676 ATCGAATCCTCCTTCATGGTCAACAAAAAGCAGGACGACAGCTGCGGACGAGGGGTACCG 706735 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGC 1630328 |||||||| || ||||| |||| Sbjct 706736 GCGTTGAACAGGGTGGGACTCGC 706758 >seq23 Length=2864373 Score = 131 bits (144), Expect = 2e-24 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| | | ||| || || ||||||||||| | |||||| | || Sbjct 1187233 GCTTGGCCAACTCACCGGGGAGGATGAGACGGACGGCGGTCTGAACCTCGCGGGACGAGA 1187292 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| || || || |||||||| | | ||||| || | | Sbjct 1187293 TGGTGGAGCGCTTGTTGTAGGCAGCAAGCTTCGAGGCCTCGGAGGCAATGCGCTCAAAGA 1187352 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| |||||||| | || |||||| | |||||||||||| || |||||||| Sbjct 1187353 TGTCGTTGACGAACGAGTTAAGGATCGACATGGCCTTGTTGGAGATACCAGTGTCGGGGT 1187412 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||||| || || ||||||| | | |||||| Sbjct 1187413 GGACCTGCTTCAGGACACGGTAGATGTAGGTCGAGTA 1187449 Score = 131 bits (144), Expect = 2e-24 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| | | ||| ||||| ||||||||||| | ||| || | || Sbjct 1194581 GCTTGGCCAACTCACCGGGGAGGATGAGGCGGACGGCGGTCTGAACCTCACGGGACGAGA 1194522 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| || || || |||||||| | | ||||| || | | Sbjct 1194521 TGGTGGAGCGCTTGTTGTAGGCAGCAAGCTTCGAGGCCTCGGAGGCAATGCGCTCAAAGA 1194462 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| |||||||| | || |||||| | |||||||||||| || |||||||| Sbjct 1194461 TGTCGTTGACGAACGAGTTAAGGATCGACATGGCCTTGTTGGAGATACCAGTGTCGGGGT 1194402 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||||| || || ||||||| | | |||||| Sbjct 1194401 GGACCTGCTTCAGGACACGGTAGATGTAGGTCGAGTA 1194365 >seq12 Length=4600585 Score = 122 bits (134), Expect = 1e-21 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| | | ||| ||||| ||||||||||| | |||||| | || Sbjct 3662232 GCTTGGCCAACTCACCGGGGAGGATGAGGCGGACGGCGGTCTGAACCTCGCGGGACGAGA 3662291 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| || || || | |||||| | ||||||| || | | Sbjct 3662292 TGGTGGAGCGCTTGTTGTAGGCAGCAAGCTTGGAGGCCTCAGAAGCGATGCGCTCAAAGA 3662351 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || ||||| | || ||||| | |||||||||||| || |||||||| Sbjct 3662352 TGTCGTTCACGAAGGAGTTGAGGATGGACATGGCCTTGTTGGAGATACCAGTGTCGGGGT 3662411 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||||| || || ||||||| | | |||||| Sbjct 3662412 GAACCTGCTTCAGGACACGGTAGATGTAGGTCGAGTA 3662448 Score = 96.9 bits (106), Expect = 4e-14 Identities = 147/206 (71%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 1852044 CGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGA 1852103 |||||||||| ||| ||| || | ||| ||| ||| ||| ||| || || || | Sbjct 4086731 CGATCTTGGAATCGGGATCGGAGGAGGACATTTTGGCGC---CGGCGAGACCGGGGACCA 4086787 Query 1852104 GCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGT-CGCGCGCA 1852162 ||||| | || ||| | |||||| || ||||| ||||||| | | || || Sbjct 4086788 TGGGGTTCATGAGATGGGAACGCTTCTTGTAACCGAGCTGGGGCAGGTACTTCTCG-GCC 4086846 Query 1852163 AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 1852222 | | |||| ||||||||||| || || ||||||||| ||||||| | |||| || | Sbjct 4086847 ATGACAAAGATCTTGCGCTGATCAACACCACCAAACTGGCAGTCGACGCCAAGGTACTCC 4086906 Query 1852223 TCGTCGAGGGCCTGCATGAGCGGGTA 1852248 || ||||||||||||||| |||||| Sbjct 4086907 TCATCGAGGGCCTGCATGCCCGGGTA 4086932 Score = 89.7 bits (98), Expect = 6e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||||| || || ||||| || | ||| | || ||||| |||| |||||| Sbjct 2183253 GCTGCCAACTACCTTGATATTAAGCCGCTTTTGGATGTCGGCTGCAAAACTGTTGCCAAC 2183312 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||||| ||||||||||| | ||||||||||| Sbjct 2183313 ATGATCAAGGGCAAGAGTGCCGAGGAGATCAGACGTACCTTTAACAT 2183359 >seq49 Length=1681262 Score = 104 bits (114), Expect = 3e-16 Identities = 258/387 (67%), Gaps = 21/387 (5%) Strand=Plus/Plus Query 1630071 GACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCC 1630130 |||| | ||||| ||||| || |||| || | |||||| |||| |||||| || ||| Sbjct 829811 GACGAAACGCGCGGTGTCATTGTAGACACGCAACATGGGGACGATGCCGTTCGAGGTGCC 829870 Query 1630131 GTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTG--CGCGGCAAAGCCGATG 1630188 ||||||||| || | || | ||| | ||||| | ||| || || || |||| | | Sbjct 829871 GTTGGTGCCGGCAATATATGAGCCTGAAGCGCGAATCTTTTGGAAGCTGC--AGCCCACG 829928 Query 1630189 CCGCCGGCCGACTTGGAGATGAGCGCGCA-CTGTTTGAGCGTGTCGTAGATGCCCTCGAT 1630247 || ||||| |||||||| || | ||||| || | || || || |||||||||||||| Sbjct 829929 CCACCGGCTGACTTGGAAATACGAGCGCAGGTGGTCAAG-GTATCATAGATGCCCTCGAT 829987 Query 1630248 CGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCGGC 1630307 ||| | |||| | |||||| |||| ||| || || | || || || Sbjct 829988 ACTGTCATCTCTCATCTGGACGAGATAGCAGCTGGAGAGCTGAGGACGGTTTGTACCAGC 830047 Query 1630308 GTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTGGC 1630367 ||||||||| || || ||||| ||||| | | | |||||| ||| || | Sbjct 830048 GTTGAAGAGGGTTGGTGTCGCGTGTGTGAAATATTTTTGGGACATGAAACTGTATGTCTC 830107 Query 1630368 GAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGACGCG 1630427 || | |||| || | ||| | || | | ||||| ||||||||| Sbjct 830108 GATAGC---------CGCA---TCAATGTCTG---TGCCGTGGATGCCGAGGGCGACGCG 830152 Query 1630428 CATGAGCATGTACTGGGGCCGCTCGAC 1630454 ||||| ||||| |||||| |||||||| Sbjct 830153 CATGATCATGTGCTGGGGACGCTCGAC 830179 >seq1 Length=4845341 Score = 104 bits (114), Expect = 3e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 ||||| ||| || || || | || |||||| ||| ||| || | || || || | Sbjct 3836035 AGGACTCCATTGGAGGTACAATCACATGCGTGATTCGGAACTGCCCTGTTGGTCTGGGTG 3835976 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 |||| |||||||| || ||||||| | ||| |||||||| |||||||| ||||| |||| Sbjct 3835975 AGCCCTGCTTTGATAAACTCGAGGCAGTGCTGGCCCACGCAATGCTGTCCATCCCCGCCA 3835916 Query 19165 CCAAGGGATTCGAGATTGGC 19184 ||||||| |||||| ||||| Sbjct 3835915 CCAAGGGTTTCGAGTTTGGC 3835896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107135178830533