Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq23 86.0 5e-12 seq47 84.2 2e-11 >seq1 Length=4845341 Score = 95.1 bits (104), Expect = 1e-14 Identities = 175/254 (69%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 || || ||||||||| ||| | ||||||| || |||||| ||||| ||||| || Sbjct 3751049 TCGGTTTCCGGGTTGCTACAGGCAGGACACAGGACGAACTTGGAAATGAAGCCATCCAGG 3750990 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 | ||| | ||| | | || || ||||| |||||| | || ||||| |||| Sbjct 3750989 ACAGACTGAAGCTTTTCAGCGTTATGCTCACCGTTCACGATGTAGCGCTCGTTCTTGTCG 3750930 Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGA 34497 ||| | || || |||| |||||| || ||| |||| || |||||| | ||| Sbjct 3750929 TCGCATTTGACCTGAGCACCCAACTCGCATCCAAAGAACTTGGTTGGGTAAGACGGAGGA 3750870 Query 34498 CGTC-CAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCC 34556 || | |||| || ||| ||||| | ||| || | ||||||||||| |||||||| Sbjct 3750869 CGACTCAAG-GCGCGGGCAATTTCAGCCATATTAGGCACAACAGTCTTGATACCGTTGCC 3750811 Query 34557 CTTTCCTTCGACCT 34570 ||| ||||| |||| Sbjct 3750810 CTTGCCTTCCACCT 3750797 >seq23 Length=2864373 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || || || ||||| || || ||| |||| ||| | | Sbjct 1571572 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTCGAGGTTGAGTCGTCC 1571631 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || | | | | || || |||||||| ||||| || ||| | || ||| || Sbjct 1571632 GACTCGATTGAGAACGTCAAGCAGAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAG 1571691 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||| ||||||| | | || | | ||||||||| Sbjct 1571692 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCTGATTACAAC 1571751 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || | ||| |||| | | ||||| || || Sbjct 1571752 ATTCAAAAGGAATCCACCCTTCACTTGGTTCTCCGCCTGCGTGGTGG 1571798 >seq47 Length=1968370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA---GCCT 110329 ||||| || ||||| || ||| | |||||||| || ||||| | ||| || | || Sbjct 81064 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACTATTACGTTGGAAGTTGAATCGTCT 81005 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || |||||| ||||| |||||| | || ||| Sbjct 81004 GAC---ACAATCGACAATGTCAAGGCCAAGATTCAAGACAAGGAAGGCATTCCTCCAGAT 80948 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | |||||| || ||||| ||||| | | || | |||| ||| Sbjct 80947 CAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTCGAGGACGGTCGCACTCTCTCGGACTAC 80888 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||||||| ||||| ||| |||| ||||| Sbjct 80887 AACATTCAAAAGGAATCGACGCTGCATTTGGTG 80855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841353456157