Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq23 190 3e-42 seq12 178 2e-38 seq47 154 2e-31 seq45 152 8e-31 seq49 105 1e-16 >seq23 Length=2864373 Score = 190 bits (210), Expect = 3e-42 Identities = 198/257 (77%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||||||||| |||||||||||| |||||| || ||| | | Sbjct 1187194 TGTACTTGGTGACAGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCCAACTCACCGGGGA 1187253 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || ||||||||||| | |||||||| ||| ||| ||||||||| || Sbjct 1187254 GGATGAGACGGACGGCGGTCTGAACCTCGCGGGACGAGATGGTGGAGCGCTTGTT-GTAG 1187312 Query 1485590 GCGCCAGGCGGC-CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || | |||||||| | | ||||| || | ||||||||||| |||||||| Sbjct 1187313 GCAGCAAGCTTCGAGGCCTCGGAGGCAATGCGCTCAAAGATGTCGTTGACGAACGAGTTA 1187372 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||||||||| | ||||||||||| || ||||||||| |||||||| || || | Sbjct 1187373 AGGATCGACATGGCCTTGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTCAGGACACGG 1187432 Query 1485709 TAAACAAAGGACGAGTA 1485725 || | ||| |||||| Sbjct 1187433 TAGATGTAGGTCGAGTA 1187449 Score = 190 bits (210), Expect = 3e-42 Identities = 198/257 (77%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||||||||| |||||||||||| |||||| || ||| | | Sbjct 1194620 TGTACTTGGTGACAGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCCAACTCACCGGGGA 1194561 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| ||||| ||||||||||| | ||| |||| ||| ||| ||||||||| || Sbjct 1194560 GGATGAGGCGGACGGCGGTCTGAACCTCACGGGACGAGATGGTGGAGCGCTTGTT-GTAG 1194502 Query 1485590 GCGCCAGGCGGC-CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || | |||||||| | | ||||| || | ||||||||||| |||||||| Sbjct 1194501 GCAGCAAGCTTCGAGGCCTCGGAGGCAATGCGCTCAAAGATGTCGTTGACGAACGAGTTA 1194442 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||||||||| | ||||||||||| || ||||||||| |||||||| || || | Sbjct 1194441 AGGATCGACATGGCCTTGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTCAGGACACGG 1194382 Query 1485709 TAAACAAAGGACGAGTA 1485725 || | ||| |||||| Sbjct 1194381 TAGATGTAGGTCGAGTA 1194365 >seq12 Length=4600585 Score = 178 bits (196), Expect = 2e-38 Identities = 195/257 (76%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||||||||| |||||||||||| |||||| || ||| | | Sbjct 3662193 TGTACTTGGTGACAGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCCAACTCACCGGGGA 3662252 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| ||||| ||||||||||| | |||||||| ||| ||| ||||||||| || Sbjct 3662253 GGATGAGGCGGACGGCGGTCTGAACCTCGCGGGACGAGATGGTGGAGCGCTTGTT-GTAG 3662311 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || | |||||| | ||||||| || | |||||||| || || ||||| Sbjct 3662312 GCAGCAAGCTTGGAGGCCTCAGAAGCGATGCGCTCAAAGATGTCGTTCACGAAGGAGTTG 3662371 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || ||||||||| |||||||| || || | Sbjct 3662372 AGGATGGACATGGCCTTGTTGGAGATACCAGTGTCGGGGTGAACCTGCTTCAGGACACGG 3662431 Query 1485709 TAAACAAAGGACGAGTA 1485725 || | ||| |||||| Sbjct 3662432 TAGATGTAGGTCGAGTA 3662448 Score = 100 bits (110), Expect = 5e-15 Identities = 164/233 (70%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 2411366 CCTCGTCGCAATCGTCGAGATCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGT 2411425 ||| | ||| ||| || ||| |||||||| ||| ||| || | ||| ||| || Sbjct 4086710 CCTTGGCGCTGTCGAGGAAATCGATCTTGGAATCGGGATCGGAGGAGGACATTTTGGCGC 4086769 Query 2411426 CCTTGGTGAGGCCCGGCACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCG 2411485 | || ||| || || |||| ||||| | || ||| ||||| ||| || ||| Sbjct 4086770 C---GGCGAGACCGGGGACCATGGGGTTCATGAGATGGGAACGCTTCTTGTAACCGAGCT 4086826 Query 2411486 CCGGCAGGTGGT-CGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGG 2411544 ||||||| | | || || | | |||||||||||||||| || || ||||||||| Sbjct 4086827 GGGGCAGGTACTTCTCG-GCCATGACAAAGATCTTGCGCTGATCAACACCACCAAACTGG 4086885 Query 2411545 GCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAG 2411597 ||||||| | |||| || ||| ||||||||||||||| |||||| | ||| Sbjct 4086886 CAGTCGACGCCAAGGTACTCCTCATCGAGGGCCTGCATGCCCGGGTATAAGAG 4086938 >seq47 Length=1968370 Score = 154 bits (170), Expect = 2e-31 Identities = 192/263 (73%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || ||||||||||| ||||||| || | ||||||||||| ||||| | ||||||||| Sbjct 706496 TGATCGACATAGCGAGCCGTGTTATTGTAAACGCGGAGCATAGGCACGATGCCGTTGGAA 706555 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | || ||||| || || | ||| | ||| || || || | || ||| | | ||| Sbjct 706556 TAACCATTGGTACCAGCGATGTACGAGCCGGAAGCCCGGATCTGGTGGATGTTGAGACCG 706615 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 ||||| || || | |||||| || | | ||| ||||||| || || |||||||| || Sbjct 706616 ATGCCACCCGCGGTCTTGGAAATTTGGGAGCAAATTTTCAGAGTTTCATAGATGCCTTCA 706675 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||| || |||||||| ||||| |||||| ||||| ||||| || | || ||| Sbjct 706676 ATCGAATCCTCCTTCATGGTCAACAAAAAGCAGGACGACAGCTGCGGACGAGGGGTACCG 706735 Query 2073781 GCATTGAAGAGCGTGGGCGTCGC 2073803 || ||||| || ||||| |||| Sbjct 706736 GCGTTGAACAGGGTGGGACTCGC 706758 >seq45 Length=2374188 Score = 152 bits (168), Expect = 8e-31 Identities = 216/301 (72%), Gaps = 2/301 (1%) Strand=Plus/Minus Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976 || ||| ||| || |||||||||||||||| ||| ||||||| ||||| | ||| Sbjct 1436606 ACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATAAAGTCGAAG 1436547 Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACG 794036 ||||||| | | |||| ||| ||| |||||||| | || || ||||| ||||| Sbjct 1436546 GGGTTGGTAGCCTTGTAGAACTTGTCGATGCCGAGCGAGACGAGGAGACGGTCAGCGACA 1436487 Query 794037 AATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGAC 794096 || |||||||| ||||||||||| | |||||||||||||| || || ||||||| | Sbjct 1436486 AACTCAATGTATTGGCACATGAGAGTCGCGTTCATGCCGATCAGAGCGACGGGCAAAGCG 1436427 Query 794097 TCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TC 794155 | | | ||||| || ||||||||||| |||||| |||||| | || |||| || Sbjct 1436426 GTGGTCAGGAACTCCTTTTCGATCTCGACTGCCTCGCGGATGAT-ACCGAGGACACGCTC 1436368 Query 794156 GGACGACGGCTTGTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAATGCAGACC 794215 || | |||| | | ||| || | | || || || ||||||||| || ||||| Sbjct 1436367 AGATGGAGGCTGCTTGCGGAGATGCGAGAAAAGGAGACAAGCAAAGTCGGTGTGGAGACC 1436308 Query 794216 T 794216 | Sbjct 1436307 T 1436307 Score = 95.1 bits (104), Expect = 2e-13 Identities = 142/196 (72%), Gaps = 12/196 (6%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCT-AAAG-CAGAGGCCGGGCATGAGGCCGCGC 794397 ||||||||| || ||| | |||||||| |||| |||| || ||||| || || ||| Sbjct 1436310 ACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAGA--CCAGGCATCAGACCACGC 1436253 Query 794398 TTCTTGAGCCAAAAGATGGCACAGAAAC-TGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||||||||||||||||||| | |||| ||| ||||| ||||| ||||| || || || Sbjct 1436252 TTCTTGAGCCAAAAGATGG-AGGCAAACGAGCCAGAGAAGAAGATACCCTCCACAGCAGC 1436194 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 ||| | || | ||||| ||||| || || | | | ||||||||| | || Sbjct 1436193 AAAAGCAACCAAACGCTCAGCAAA------CACACCGTTTGAGGAGATCCACTTGAATGC 1436140 Query 794517 CCACTCTGCCTTTTTC 794532 ||| || ||||| ||| Sbjct 1436139 CCATTCGGCCTTCTTC 1436124 >seq49 Length=1681262 Score = 105 bits (116), Expect = 1e-16 Identities = 253/379 (67%), Gaps = 19/379 (5%) Strand=Plus/Plus Query 2073553 CGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGACTCGCCGTTGGTG 2073612 ||||| ||||| || |||| || | |||||| || | |||||| || |||||||||| Sbjct 829818 CGCGCGGTGTCATTGTAGACACGCAACATGGGGACGATGCCGTTCGAGGTGCCGTTGGTG 829877 Query 2073613 CCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTG--CGCGGCAAAGCCGATGCCGCCGG 2073670 || || | || | ||| || ||||| | ||| || || || |||| | ||| |||| Sbjct 829878 CCGGCAATATATGAGCCTGAAGCGCGAATCTTTTGGAAGCTGC--AGCCCACGCCACCGG 829935 Query 2073671 CCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCGATCGAGTCGG 2073730 | | |||||| || | ||||| | ||| || || |||||||||||||| ||| Sbjct 829936 CTGACTTGGAAATACGAGCGCAGGTGGTCAAGGTATCATAGATGCCCTCGATACTGTCAT 829995 Query 2073731 CCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCGGCATTGAAGA 2073790 | |||| | | ||| |||| ||| || || || || || || ||||||| Sbjct 829996 CTCTCATCTGGACGAGATAGCAGCTGGAGAGCTGAGGACGGTTTGTACCAGCGTTGAAGA 830055 Query 2073791 GCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGTGGCGAGCACGC 2073850 | || || ||||| ||| | | | |||||||||| ||| || ||| | | Sbjct 830056 GGGTTGGTGTCGCGTGTGTGAAATATTTTTGGGACATGAAACTGTATGTCTCGA-TAGCC 830114 Query 2073851 GCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGACGCGCATGATCA 2073910 || || |||| | ||| | || ||||| ||||||||||||||||| Sbjct 830115 GCATCA--ATGTCTGTGCCGTGG--------AT----GCCGAGGGCGACGCGCATGATCA 830160 Query 2073911 TGTACTGGGGTCGCTCGAC 2073929 ||| |||||| |||||||| Sbjct 830161 TGTGCTGGGGACGCTCGAC 830179 Score = 98.7 bits (108), Expect = 2e-14 Identities = 159/228 (70%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 2069265 CTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGTCTTGAGGCCGCG 2069324 || |||||| | ||||||||||||| || || || |||||||| |||||||| || Sbjct 828081 CTTGATGGCATCAACGGCAGGCCGGGTTCGAAGGTAATACATGCCCGTCTTGAGACCCTT 828140 Query 2069325 ACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGC----ATTCGGGACGGCACAGT 2069380 ||| | ||| |||||||||||| | ||||| || || ||||| | Sbjct 828141 CTTCCAAGAGTAAAAGTGCATCGACGT----CAGTCGGCCATAGTTTGGCTCGGCAACGA 828196 Query 2069381 AGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCCATGTCGATGG 2069440 | || || | ||||||| |||||||| | | || |||||||| |||||||| || Sbjct 828197 ACAGATTCAACGACTGGGACTGGTCGATGAAAGCAGCACGGTCGGCGGCCATGTCAATAA 828256 Query 2069441 TCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGAT 2069488 | || || | |||| |||||||| |||||| |||| ||||||| Sbjct 828257 TGACACGCTGAGACAGTTCCCACACTGTCTTGTACAGCTTTTTGAGAT 828304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916241187646511