Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq47 134 9e-27 seq23 118 7e-22 seq48 87.8 1e-12 >seq47 Length=1968370 Score = 134 bits (148), Expect = 9e-27 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||||||||| || ||||| ||| |||| | || || ||||| || ||||| ||| Sbjct 81102 TCCTTCTGAATGTTGTAATCCGAGAGGGTGCGACCGTCCTCGAGTTGTTTGCCGGCAAAG 81161 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||| || |||||||| |||| | || |||||||| | || || ||||| Sbjct 81162 ATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTG 81221 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| || |||||| |||| |||||| |||||||| || || ||||| || Sbjct 81222 TCAATGGTGTCAGAGGACTCGACTTCAAGGGTTATAGTCTTTCCGGTAAGTGTCTTGACG 81281 Query 34967 AAGATCTGCATGAT 34980 |||||||||||||| Sbjct 81282 AAGATCTGCATGAT 81295 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| |||||||| |||||||| || |||| | || || || ||||| || || ||| Sbjct 80874 TCCTTTTGAATGTTGTAGTCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAG 80933 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||| || ||||| ||| | || | || |||||||| | || || ||||| || Sbjct 80934 ATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTGGCCTTGAC--AT 80991 Query 34907 GCTATCGATT----CATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962 | |||||| || | || || || | || || ||||| || || || ||||| Sbjct 80992 --TGTCGATTGTGTCAGACGATTCAACTTCCAACGTAATAGTCTTGCCGGTCAGAGTCTT 81049 Query 34963 TACAAAGATCTGCAT 34977 |||||||||||||| Sbjct 81050 CACAAAGATCTGCAT 81064 >seq23 Length=2864373 Score = 118 bits (130), Expect = 7e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| || || || ||| |||| |||| |||| ||||| || || || Sbjct 1571535 CTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAA 1571476 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || ||||| || | || | ||||||||||| | || || || |||||| Sbjct 1571475 GATGAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGAATCTTCTGCTTGACGTT 1571416 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || || || | |||||| |||| || |||||||| || ||||||||||| || Sbjct 1571415 CTCGATAGAGTCGGAAGACTCGACTTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGAC 1571356 Query 34966 AAAGATCTGCATG 34978 || ||||||||| Sbjct 1571355 GAAAATCTGCATG 1571343 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| |||| ||||| |||||||| || || || || |||| |||| Sbjct 1571783 AGAACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGGCCATCC 1571724 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| || || |||||||| | || | ||||||||||| Sbjct 1571723 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCT 1571664 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || |||||| | ||||| || | ||| || || | ||| || ||| Sbjct 1571663 TGGATCTTCTGCTTGACGTTCTCAATCGAGTCGGACGACTCAACCTCGAGGGTGATAGTC 1571604 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | |||||| |||||||| ||||| Sbjct 1571603 TTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1571572 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || || | |||| ||||||||| || || ||||| || ||| |||| |||| Sbjct 1572239 AGCACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGGCCATCC 1572180 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| || || |||||||| | || | ||||||||||| Sbjct 1572179 TCGAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCT 1572120 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || || | | ||||| ||| | ||| || |||| || |||||| Sbjct 1572119 TGGATCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCAACCTCAAGTGTAATGGTC 1572060 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || || |||||||| Sbjct 1572059 TTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 1572028 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| |||||| || ||||| |||||||| || | || | || Sbjct 1572467 AGGACAAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGCGTACGACCGTCC 1572408 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| || || |||||||| | || | ||||||||||| Sbjct 1572407 TCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 1572348 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || |||||| | || || ||| | ||| || || | ||| || ||| Sbjct 1572347 TGAATCTTCTGCTTGACGTTCTCAATGGAGTCAGACGACTCAACCTCGAGGGTGATAGTC 1572288 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | |||||| |||||||||||||| Sbjct 1572287 TTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 1572256 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || || |||| |||| || || ||||| || ||||| Sbjct 1571991 CTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAA 1571932 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || || || |||||||| | || | ||||||||||| | || || || || || Sbjct 1571931 AATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTCTGCTTCACATT 1571872 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || || ||| | ||| || || | ||| |||||||| || || | |||||| || Sbjct 1571871 TTCGATAGAGTCAGATGACTCAACTTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 1571812 Query 34966 AAAGATCTGCAT 34977 || |||||||| Sbjct 1571811 GAAAATCTGCAT 1571800 >seq48 Length=1814144 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||||||||||||||| |||||||| ||| |||| | || Sbjct 1641590 AGCACAAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 1641531 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || || ||||| || ||||| ||||| || |||||||| Sbjct 1641530 TCGAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTC 1641493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692605500331