Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq47 107 2e-18 >seq47 Length=1968370 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| || || |||||||| || || || | || || | Sbjct 80836 ATGCAAATTTTTGTCAAGACCTTGACAGGCAAGACTATAACATTAGAGGTCGAATCATCT 80777 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || ||| ||||| |||||||||||| | || || || Sbjct 80776 GATACGATCGATAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCGCCTGACCAA 80717 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | |||||| || ||||| ||||||| || || |||||||||| Sbjct 80716 CAGCGTCTTATCTTTGCGGGCAAGCAGCTCGAGGACGGACGGACTTTGTCGGACTACAAT 80657 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||||||||||| ||| |||| |||| || | |||| || |||| Sbjct 80656 ATTCAAAAGGAGTCCACGCTGCATTTGGTCCTGCGTCTGCGTGGCGGAA 80608 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || ||| | || ||||| || ||||| | ||| || | Sbjct 81064 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACTATTACGTTGGAAGTTGAATCGTCT 81005 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || |||||| || || |||||| | || |||||| Sbjct 81004 GACACAATCGACAATGTCAAGGCCAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAG 80945 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | |||||| || ||||| ||||||| || | ||||||||||| Sbjct 80944 CAGCGTCTGATCTTTGCGGGCAAGCAGCTCGAGGACGGTCGCACTCTCTCGGACTACAAC 80885 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||| || ||| |||| ||||| || | || || || || Sbjct 80884 ATTCAAAAGGAATCGACGCTGCATTTGGTGCTGCGCTTACGCGGCGG 80838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876561795761