Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq47 163 6e-35 seq23 132 9e-26 >seq47 Length=1968370 Score = 163 bits (180), Expect = 6e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 || ||||| || || ||||| || ||||| || || || || || || || ||| | | | Sbjct 80847 AAGCGCAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGAGAGAGTGCGA 80906 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 ||||| || || || || || |||||||| || | || ||||||||||| || |||||| Sbjct 80907 CCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCC 80966 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || ||||||||||| || || ||||| || || || ||| | ||| |||||||| || Sbjct 80967 TTGTCTTGAATCTTGGCCTTGACATTGTCGATTGTGTCAGACGATTCAACTTCCAACGTA 81026 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| |||| ||||| ||||| |||||||| Sbjct 81027 ATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 81064 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82581 CTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCA 82640 || || || | || |||||| || || ||||| || || || || || ||||| || || Sbjct 80607 CTTCCGCCACGCAGACGCAGGACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCC 80666 Query 82641 GATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGA 82700 || | | | | ||||| || || || || || |||||||| || | ||||| || || Sbjct 80667 GACAAAGTCCGTCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGC 80726 Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 || || ||||| ||||| || ||||| ||||| ||||| || ||||||||| | ||| Sbjct 80727 GGAATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTATCGATCGTATCAGATGATTCG 80786 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| |||||||||||||| ||||| ||||| || ||||| Sbjct 80787 ACCTCTAATGTTATAGTCTTGCCTGTCAAGGTCTTGACAAAAATTTGCAT 80836 >seq23 Length=2864373 Score = 132 bits (146), Expect = 9e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || ||||| || ||||||||||| || ||||| || || || |||| Sbjct 1572028 TACCACCACGCAGGCGGAGAACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAG 1571969 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || ||||| || || || | || || || |||| Sbjct 1571968 AGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAG 1571909 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| ||||| ||||| ||| || |||||||| || | ||| | || Sbjct 1571908 GAATACCCTCCTTGTCTTGGATCTTCTGC-TTCACATTTTCGATAGAGTCAGATGACTCA 1571850 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| | || || |||||||| ||||| ||||| || || |||||||| Sbjct 1571849 ACTTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 1571800 Score = 123 bits (136), Expect = 5e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || ||||| ||||| || || ||||| || || || || ||||||| Sbjct 1571800 TACCACCACGCAGGCGGAGAACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAG 1571741 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || || || || ||||||||||| || | || || || |||| Sbjct 1571740 AGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAG 1571681 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| ||||| ||||| ||| || || || ||||||| || | || Sbjct 1571680 GGATGCCCTCCTTGTCTTGGATCTTCTGC-TTGACGTTCTCAATCGAGTCGGACGACTCA 1571622 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || |||||||| ||||| ||||| ||||| || ||||| Sbjct 1571621 ACCTCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1571572 Score = 114 bits (126), Expect = 3e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || || || || || ||||| ||||| || || | Sbjct 1572256 TACCACCACGGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGG 1572197 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || || || || ||||||||||| || | || || || |||| Sbjct 1572196 AAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAG 1572137 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| ||||| ||||| ||||| ||||||||||||| ||| | || Sbjct 1572136 GAATACCCTCCTTGTCTTGGATCTTCTGCTTC-ACATTTTCAATCGAGTCAGATGACTCA 1572078 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || |||||||| |||| |||||| || || |||||||| Sbjct 1572077 ACCTCAAGTGTAATGGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 1572028 Score = 111 bits (122), Expect = 3e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || ||||| || || ||||| || || ||||| | Sbjct 1571572 TACCACCACGGAGACGGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGG 1571513 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| | || || ||||||||||| || | || ||||| |||| Sbjct 1571512 AGAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAG 1571453 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| ||||||||||| ||| || || || || || | || || || Sbjct 1571452 GAATGCCCTCCTTGTCTTGAATCTTCTGC-TTGACGTTCTCGATAGAGTCGGAAGACTCG 1571394 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| | ||| || |||||||| || | ||||| || || |||||||| Sbjct 1571393 ACTTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1571344 Score = 105 bits (116), Expect = 1e-17 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || || || || || || || || || || || || || | | ||| Sbjct 1572471 ACGGAGGACAAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGCGTACGACC 1572412 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || ||||||||||| || | || || || ||||| || || ||||| Sbjct 1572411 GTCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTT 1572352 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 || |||||||| ||| || || || ||||| | ||| | || || || | || | Sbjct 1572351 GTCCTGAATCTTCTGC-TTGACGTTCTCAATGGAGTCAGACGACTCAACCTCGAGGGTGA 1572293 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| ||||| ||||| ||||| |||||||| Sbjct 1572292 TAGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 1572256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826583596611