Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq47 105 4e-18 seq23 104 2e-17 >seq47 Length=1968370 Score = 105 bits (116), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 33532 AAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGT 33591 || || | ||||||||| || || || ||||| |||||||| || ||||| ||||| Sbjct 80847 AAGCGCAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGAGAGAGTGCGA 80906 Query 33592 TCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCT 33651 |||| || | || || || ||||| |||| ||||||||||||| | || | ||||| Sbjct 80907 CCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCC 80966 Query 33652 TTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGT 33710 ||||| ||| || | | |||| ||| | ||||| ||||| || || | ||| Sbjct 80967 TTGTCTTGAATCTT-GGCCTTGACATTGTCGATTGTGTCAGACGATTCAACTTCCAACGT 81025 Query 33711 GATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || || || | || || ||||||||||||||| Sbjct 81026 AATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCATA 81065 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||| | ||| || || || || || ||||||||||| || Sbjct 81065 ACCACCACGGAGACGAAGCACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAATCCGA 81124 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| |||| || | |||||| |||||||| |||| ||||||||| || |||| Sbjct 81125 GAGGGTGCGACCGTCCTCGAGTTGTTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGG 81184 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || | | |||| ||| | |||||| || || | Sbjct 81185 GATGCCTTCCTTGTCCTGAATCTT-GGACTTGACATTGTCAATGGTGTCAGAGGACTCGA 81243 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| || || || || || || | || || || ||||||||||| Sbjct 81244 CTTCAAGGGTTATAGTCTTTCCGGTAAGTGTCTTGACGAAGATCTGCAT 81292 >seq23 Length=2864373 Score = 104 bits (114), Expect = 2e-17 Identities = 168/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||| | ||| |||||| ||| || || |||||||||||||| Sbjct 1571571 ACCACCACGGAGACGGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGA 1571512 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || ||||| || || || ||||| || | ||||||||||| | || Sbjct 1571511 GAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGG 1571452 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||| ||||| || || | || | | |||| || || | Sbjct 1571451 AATGCCCTCCTTGTCTTGAATCTTCTGCTT-GACGTTCTCGATAGAGTCGGAAGACTCGA 1571393 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTG 33759 | |||| ||||| || || || || | || || || || |||||||| ||||| || Sbjct 1571392 CTTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGTTTGGTATG 1571334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703803702080