Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq23 120 7e-22 >seq23 Length=2864373 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || |||||| | ||||| || ||| ||| Sbjct 1571347 CAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAAGTCGAGTCTTCCGAC 1571406 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| ||||||||||| || || || ||| ||||| || Sbjct 1571407 TCTATCGAGAACGTCAAGCAGAAGATTCAAGACAAGGAGGGCATTCCTCCGGATCAGCAG 1571466 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || ||||||||||||||||| | || | ||||||||||| || Sbjct 1571467 CGCCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTCTCCGATTACAACATC 1571526 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| || ||||| Sbjct 1571527 CAGAAGGAGTCCACTCTCCATCTTGT 1571552 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||| | ||||| || |||||| Sbjct 1571803 CAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAAGTTGAGTCATCTGAC 1571862 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | ||||| || ||||| ||||| ||||| || || || ||| |||||| || Sbjct 1571863 TCTATCGAAAATGTGAAGCAGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAGCAG 1571922 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| || |||||| | |||||||| | ||| | | || |||||| || Sbjct 1571923 CGTCTCATTTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAACATC 1571982 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| ||||||||||| || Sbjct 1571983 CAGAAGGAGTCTACTCTGCA 1572002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820058038129