Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq47 150 2e-31 seq45 131 2e-25 seq49 86.0 6e-12 seq23 86.0 6e-12 >seq47 Length=1968370 Score = 150 bits (166), Expect = 2e-31 Identities = 348/519 (67%), Gaps = 9/519 (2%) Strand=Plus/Plus Query 147894 GTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGAC 147950 ||||||||| || | ||||| ||| | ||||| ||||| || || || ||||| Sbjct 706444 GTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGGCGCTTGTTGCCACCTTGATCGAC 706503 Query 147951 ATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTT 148010 || ||| || |||| || | ||||| | ||| || | | |||| | | | || || Sbjct 706504 ATAGCGAGCCGTGTTATTGTAAACGCGGAGCATAGGCACGATGCCGTTGGAATAACCATT 706563 Query 148011 GGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC 148070 ||| | ||| | |||| || || | | ||| | ||| | || ||||| || Sbjct 706564 GGTACCAGCGATGTACGAGCCGGAAGCCCGGATCTGGTGGATGTTGAGACCGATGCCACC 706623 Query 148071 GCCGTACTTTGATAT--GGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTG 148128 || ||| || || || ||| | | | | | || | ||||||| || || Sbjct 706624 CGCGGTCTTGGAAATTTGGGAGCAAATTTTCAGAGTTTCAT--AGATGCCTTCAATCGAA 706681 Query 148129 TCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAG 148188 || | || | | | |||||| || || ||| |||||| | || || || | Sbjct 706682 TCCTCCTTCATGGTCAACAAAAAGCAGGACGACAGCTGCGGACGAGGGGTACCGGCGTTG 706741 Query 148189 AAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATA 148248 || ||||||||||||||||| ||||| |||| | | ||| | | || |||||||| Sbjct 706742 AACAGGGTGGGACTCGCGTGGGTAAAGTATTTCTCAGACATGAGGTTGTAAGTCTCAATG 706801 Query 148249 GCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGT 148308 ||| ||||||| || ||||||||||| |||| || || ||||| | ||||||||| ||| Sbjct 706802 GCGCCTTCGATATCCTCGCCGTGAATACCCACAGCCACACGCATCAACATGTGCTGCGGT 706861 Query 148309 CGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACC 148367 || ||||||| |||| ||||| ||| || | ||| || ||| || || ||| | || Sbjct 706862 CGCTCGGCAATCTTG-CCGTTGAGCTTCAGCAAATAAGCACGTTCCAGCGTCTTGAAGCC 706920 Query 148368 AAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 |||||| ||||| | ||||| | ||||| |||||| Sbjct 706921 AAAGTAGTTGTAGCCGAAATCGCGATCGTAGATGATGGC 706959 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 || ||||||| |||||||| | | || || ||||||||||||||||| | || Sbjct 80844 CGTAAGCGCAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGAGAGAGTG 80903 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || |||||||| || || | | |||| |||||||| ||||||||||| |||||| Sbjct 80904 CGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCT 80963 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || ||| || || | | || | || || | || || ||||| | | Sbjct 80964 TCCTTGTCTTGAATCTTGGCCTTGACATTGTCGATTGTGTCAGACGATTCAACTTCCAAC 81023 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || |||||||| || | || |||||||| Sbjct 81024 GTAATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 81064 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||||||| | | ||||| |||||||| |||||||| || || Sbjct 80615 ACGCAGACGCAGGACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGACAAAGT 80674 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || |||||||| || || | | |||| ||||||||||| || || || ||||| Sbjct 80675 CCGTCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGAATGCC 80734 Query 132022 TTCTTTATC 132030 ||||||||| Sbjct 80735 TTCTTTATC 80743 >seq45 Length=2374188 Score = 131 bits (144), Expect = 2e-25 Identities = 245/352 (70%), Gaps = 11/352 (3%) Strand=Plus/Plus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || ||||| ||||| |||||| | |||||||| |||||||| || ||||| ||| Sbjct 1436263 ATGCCTGGTCTGACTTTCAGCAACGAGCTCATCTCGCGTGACGAAGGTCTCCACACCGAC 1436322 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGACACGATCCTG 47033 ||||| |||||| || | | | | || || | || || |||| Sbjct 1436323 TTTGCTTGTCTCCTTTTCTCGCATCTCCGCAAGCAGCCTCCA---TCTGAGCGTGTCCTC 1436379 Query 47034 AGCATGTTTAGGGAGGCGGT-GAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGT 47092 | || | | ||||| || ||| |||||||||||||| | || | || ||||||| Sbjct 1436380 GGTATCATCCGCGAGGCAGTCGAG-ATCGAAAAGGAGTTCCTGACCACCGCTTTGCCCGT 1436438 Query 47093 CGCCTTGCTGGGCATGAACGC-ACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATC 47151 ||| || | ||||||||||| || || |||||| |||| ||||||||||| || || | Sbjct 1436439 CGCTCTGATCGGCATGAACGCGACTCTC-ATGTGCCAATACATTGAGTTTGTCGCTGACC 1436497 Query 47152 GTCTGTTGGTGCAGCTCGGACAACCGAAATATTTT--AATGCTCGTAATCCGTTTGAGTT 47209 |||| | || |||||| | ||| | || | || ||| || || || || || Sbjct 1436498 GTCTCCTCGTCTCGCTCGG--CATCGACAAGTTCTACAAGGCTACCAACCCCTTCGACTT 1436555 Query 47210 TATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTC 47261 |||| ||| || || ||| ||||||| ||||| || || ||||| || ||| Sbjct 1436556 TATGGACATGATCTCTCTCCAGGGCAAGACCAACTTCTTTGAGAAGCGTGTC 1436607 >seq49 Length=1681262 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 148188 GAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAAT 148247 ||| ||||| || ||||||| || || ||||||| ||| | | || ||||| || Sbjct 830051 GAAGAGGGTTGGTGTCGCGTGTGTGAAATATTTTTGGGACATGAAACTGTATGTCTCGAT 830110 Query 148248 AGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGG 148307 ||| | || ||||| |||||| ||||| || ||||||||||||| ||||||||| || Sbjct 830111 AGCCGCATCAATGTCTGTGCCGTGGATGCCGAGGGCGACGCGCATGATCATGTGCTGGGG 830170 Query 148308 TCGTTCG 148314 || ||| Sbjct 830171 ACGCTCG 830177 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 146593 TAATACATGCCCGTTTTGAGGCCACATC-GCCACGAGTGATTGTGAATCGAAGTCATGAT 146651 |||||||||||||| ||||| || | || ||| |||| | ||| ||||| |||| Sbjct 828115 TAATACATGCCCGTCTTGAGACC-CTTCTTCCAAGAGTAAAAGTGCATCGACGTCAGTCG 828173 Query 146652 GGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTT 146711 | | || | ||||| || ||||| ||||| ||||| ||| || || |||||||| Sbjct 828174 GCCATAGTTTGGCTCGGCAACGAACAGATTCAACGACTGGGACTGGTCGATGAAAGCAGC 828233 Query 146712 GCGGTCGGCCGCCATCTCAATCATG 146736 |||||||| ||||| ||||| ||| Sbjct 828234 ACGGTCGGCGGCCATGTCAATAATG 828258 >seq23 Length=2864373 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | ||||||||| | | ||||| || || ||||||||||| | || Sbjct 1572021 ACGCAGGCGGAGAACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGAGT 1571962 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | | || |||||||| || || ||||| || || Sbjct 1571961 GCGGCCATCTTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACC 1571902 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || |||| | ||| | || || | | ||| ||||||| Sbjct 1571901 CTCCTTGTCTTGGATCTTCTGCTTCACATTTTCGATAGAGTCAGATGACTCAACTTCGAG 1571842 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || |||| || || | |||||||||||| Sbjct 1571841 GGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 1571800 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||| ||| | ||| || |||||| | ||| || || | | Sbjct 1571537 GACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCA 1571478 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| ||||| ||||| ||||| || || || ||| || || || | Sbjct 1571477 AAGATGAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGAATCTTCTGCTTGACG 1571418 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | ||| ||||| | || | || || || || || || || Sbjct 1571417 TTCTCGATAGAGTCGGAAGACTCGACTTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTG 1571358 Query 132110 ATGAAAATCTGCATG 132124 | ||||||||||||| Sbjct 1571357 ACGAAAATCTGCATG 1571343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610908075640