Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1 129 7e-25 >seq1 Length=4845341 Score = 129 bits (142), Expect = 7e-25 Identities = 426/661 (64%), Gaps = 40/661 (6%) Strand=Plus/Minus Query 146941 TAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGG 147000 |||| ||| | ||| |||| ||| || ||||| || ||||||| ||| | || || || Sbjct 663053 TAGATGTGGGTGTCGCCCATGGTATGGACAAACTCGCCCGGCTCGAGGTCAGTGACATGA 662994 Query 147001 GCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATG 147060 || | |||| | || ||||||| || || ||||||||||| || || ||||||||| Sbjct 662993 GCGATCATGCATGTCAGCAGCGCATACGATGCAATGTTGAAGGGCACACCGAGGCCCATG 662934 Query 147061 TCCCCCGACCTCTGGTACA---------GCTGGCACGAGAGCTCCCCGTCG--------- 147102 || | ||| | |||||| | | ||| || |||| || ||| Sbjct 662933 TCGCACGAGCGCTGGTATAAAACGCAAGACAGGCGCGCACGCTCACCCTCGCGAGGGGTT 662874 Query 147103 GCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCG 147162 | || ||||| || || | | || || || ||||| |||||| ||| | || || Sbjct 662873 GAGACATAAAATTGACAAAAGGCATGACAAGGTGGCAGAGCCATGATGGGGATATCGGCT 662814 Query 147163 GGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATA 147222 |||||||| || || | | | || | | ||||| | |||| || || Sbjct 662813 GGGTTCCATGCGGATAGAATGATGCGACGGTCAGTAGGGTTGTTTCTAATGGTATCAATG 662754 Query 147223 ACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTG 147282 | | | || ||||| ||||| || || || | || |||||||| ||| Sbjct 662753 ATCTGCTGGAGTTGGTCGACGCCTTGTCCTGTATAATCCGTATCGCAGTCCTTGTATTCT 662694 Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || |||||||| | ||||||||| ||||| || || || || ||||| || | ||| Sbjct 662693 GCTCCAAAGTGGCGCCACTGGAATCCGTAGACGGGGCCGAGATCGCCTTCTTTGCGGTGG 662634 Query 147343 GAGAAGCCCGCCCG-CTTGAGAAACTCGGGGGACCCGTGGGCGTCCCA------GATG-C 147394 || || || | | | ||||||||| | || |||| | | ||||| |||| | Sbjct 662633 GA-CAGTCCACGAGAGTCGAGAAACTCACGTGAACCGTTGCCATCCCAAATCTTGATGCC 662575 Query 147395 CCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCT 147454 || ||| || | || ||| || ||| |||| ||||||||| || |||| Sbjct 662574 CCGCTCGCTCAGGTGATGGCT-------GTTCGTATCGCCCTTGATGAACCAAAGGAGCT 662522 Query 147455 CCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGTCCC 147511 | |||| || || | ||||||| | || |||||||||| || ||| | ||| | Sbjct 662521 CTTCCAGTACGCCACGGAAAAAGACTCGTTTTGTGGTCAGCAATGGAAACAGATTGTCAC 662462 Query 147512 TCAGCGAATACCTCGCCTGGTCC---CCAAACACAGACAGCGTGCCCGTGCCCGTCCTGT 147568 | || || ||| | |||| | |||| |||| ||| ||||| ||||| ||||||| Sbjct 662461 TTAGGGAGAACCGCAGCTGGGGCGGGGCAAATACAGCCAGAGTGCCTGTGCCGGTCCTGT 662402 Query 147569 C 147569 | Sbjct 662401 C 662401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583487642613600