Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq23 152 7e-31 seq47 150 3e-30 seq45 141 1e-27 seq12 136 6e-26 seq2 91.5 2e-12 >seq23 Length=2864373 Score = 152 bits (168), Expect = 7e-31 Identities = 183/245 (75%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| ||| |||||| || || |||||||| |||||| || | | ||| Sbjct 1187449 TACTCGACCTACATCTACCGTGTCCTGAAGCAGGTCCACCCCGACACTGGT-----ATC- 1187396 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||||||||| | |||||||| ||||||||||| | || ||||| | | Sbjct 1187395 TCCAACAAGGCCATGTCGATCCTTAACTCGTTCGTCAACGACATCTTTGAGCGCATTGCC 1187336 Query 725019 ACCGAGGCCG-GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 |||||||| | || || || || |||||||||| ||| ||| | |||||| | Sbjct 1187335 TCCGAGGCCTCGAAGCTTGCTGC-CTACAACAAGCGCTCCACCATCTCGTCCCGCGAGGT 1187277 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 ||||||||||| || || ||| | | ||| || |||||| |||||||||||| ||||| Sbjct 1187276 TCAGACCGCCGTCCGTCTCATCCTCCCCGGTGAGTTGGCCAAGCACGCCGTCTCTGAGGG 1187217 Query 725138 CACCA 725142 |||| Sbjct 1187216 TACCA 1187212 Score = 152 bits (168), Expect = 7e-31 Identities = 183/245 (75%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| ||| |||||| || || |||||||| |||||| || | | ||| Sbjct 1194365 TACTCGACCTACATCTACCGTGTCCTGAAGCAGGTCCACCCCGACACTGGT-----ATC- 1194418 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||||||||| | |||||||| ||||||||||| | || ||||| | | Sbjct 1194419 TCCAACAAGGCCATGTCGATCCTTAACTCGTTCGTCAACGACATCTTTGAGCGCATTGCC 1194478 Query 725019 ACCGAGGCC-GGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 |||||||| | || || || || |||||||||| ||| ||| | || ||| | Sbjct 1194479 TCCGAGGCCTCGAAGCTTGCTGC-CTACAACAAGCGCTCCACCATCTCGTCCCGTGAGGT 1194537 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 ||||||||||| ||||| ||| | | ||| || |||||| |||||||||||| ||||| Sbjct 1194538 TCAGACCGCCGTCCGCCTCATCCTCCCCGGTGAGTTGGCCAAGCACGCCGTCTCTGAGGG 1194597 Query 725138 CACCA 725142 |||| Sbjct 1194598 TACCA 1194602 >seq47 Length=1968370 Score = 150 bits (166), Expect = 3e-30 Identities = 191/263 (73%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 |||| ||||| || || || ||||| || || || |||||| ||||| |||||| || Sbjct 706758 GCGAGTCCCACCCTGTTCAACGCCGGTACCCCTCGTCCGCAGCTGTCGTCCTGCTTTTTG 706699 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 ||| |||||||| |||||||| || ||||||||||| || || || ||| | | Sbjct 706698 TTGACCATGAAGGAGGATTCGATTGAAGGCATCTATGAAACTCTGAAAATTTGCTCCCAA 706639 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 || |||||| | || || ||||||||| | | ||| || | || || | ||| | Sbjct 706638 ATTTCCAAGACCGCGGGTGGCATCGGTCTCAACATCCACCAGATCCGGGCTTCCGGCTCG 706579 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 ||| | || || ||||| || | ||||||||| | ||||| ||||| ||||||| || Sbjct 706578 TACATCGCTGGTACCAATGGTTATTCCAACGGCATCGTGCCTATGCTCCGCGTTTACAAT 706519 Query 260159 GACACGGCGCGCTACGTCGACCA 260181 ||||||| ||||| ||||| || Sbjct 706518 AACACGGCTCGCTATGTCGATCA 706496 >seq45 Length=2374188 Score = 141 bits (156), Expect = 1e-27 Identities = 213/296 (72%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGAC 1456506 |||| | ||| |||||||| ||||| || | | || ||| ||| |||| | | Sbjct 1436307 AGGTCTCCACACCGACTTTGCTTGTCTCCTTTTCTCGCATCTCCGCAAGCAGCCTCCATC 1436366 Query 1456507 CGA-CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 || |||| || | |||||| |||||| ||||||||||| || ||||| | | | Sbjct 1436367 TGAGCGTGTCCTCGGT-ATCATCCGCGAGGCAGTCGAGATCGAAAAGGAGTTCCTGACCA 1436425 Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAA 1456625 | |||| || || || |||||||||||||| | | ||||||||||| ||||||| | Sbjct 1436426 CCGCTTTGCCCGTCGCTCTGATCGGCATGAACGCGA-CTCTCATGTGCCAATACATTG-A 1436483 Query 1456626 TTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCA 1456685 |||||||| ||||| || |||| |||||||| | || ||| |||| | | ||| Sbjct 1436484 GTTTGTCGCTGACCGTCTCCTCGTCTCGCTCGGCATC-GACAAGTTCTACAAGGCTACCA 1436542 Query 1456686 ACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||| ||| | ||||| ||||||| ||| |||||||||||||||| || ||| Sbjct 1436543 ACCCCTTCGACTTTATGGACATGATCTCTCTCCAGGGCAAGACCAACTTCTTTGAG 1436598 Score = 96.9 bits (106), Expect = 5e-14 Identities = 169/245 (69%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 1455865 TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCG-- 1455922 ||| | | || ||||| | || ||| ||| || || || || ||| ||||| | Sbjct 1435753 TGACCAAGGATGAGCGTTACTTTATCTCGCATGTGCTTGCTTTCTTT----GCCAGTGCA 1435808 Query 1455923 -ATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAG 1455981 |||||||||| ||||||| ||| || ||||| || || ||||| | || || Sbjct 1435809 GATGGCATCGTCAACGAGAACTTGGTCGAACGCTTCTGCAATGAAGTCCAGATCCCTGAA 1435868 Query 1455982 GCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCG 1456041 || | || ||||| ||||||||| || || ||||| ||| |||| ||||| || Sbjct 1435869 GCCAAGTGCTTCTACGGCTTCCAGATCATGATTGAGAACATTCACGCTGAGACCTATTCT 1435928 Query 1456042 CTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATC 1456101 || |||||||||| || |||||||| | | |||||||| || || ||| ||||| Sbjct 1435929 CTTTTGATCGACACTTATATCAAGGACTCTGCTGAGAAGGAGCATCTTTTTGATGCCATT 1435988 Query 1456102 GACAC 1456106 | ||| Sbjct 1435989 GCCAC 1435993 >seq12 Length=4600585 Score = 136 bits (150), Expect = 6e-26 Identities = 181/247 (73%), Gaps = 12/247 (5%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| ||| |||||| || || |||||||| |||||| || | | ||| Sbjct 3662448 TACTCGACCTACATCTACCGTGTCCTGAAGCAGGTTCACCCCGACACTGGT-----ATC- 3662395 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||||| ||| | ||||| || || |||||||| | || ||||||| Sbjct 3662394 TCCAACAAGGCCATGTCCATCCTCAACTCCTTCGTGAACGACATCTTTGAGCGCATCGCT 3662335 Query 725019 ACCGAGGCCGGTC---GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | |||||| || || || || || |||||||||| ||| ||| | |||||| Sbjct 3662334 TCTGAGGCC--TCCAAGCTTGCTGC-CTACAACAAGCGCTCCACCATCTCGTCCCGCGAG 3662278 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 | ||||||||||| ||||| ||| | | ||| || |||||| |||||||||||| ||| Sbjct 3662277 GTTCAGACCGCCGTCCGCCTCATCCTCCCCGGTGAGTTGGCCAAGCACGCCGTCTCTGAG 3662218 Query 725136 GGCACCA 725142 || |||| Sbjct 3662217 GGTACCA 3662211 >seq2 Length=1480469 Score = 91.5 bits (100), Expect = 2e-12 Identities = 86/107 (80%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 165757 TGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGG 165816 ||||| ||||||| ||| |||| || |||||||||||| |||||||||||| ||| ||| Sbjct 593954 TGGTCTCGTGGGGTGCCATCGGCGCCCGCACCACCGAGTCCCAGGTGCACCGTGAGCTGG 594013 Query 165817 CGTCGGCGCTGCCGCTG-CCCATTGGCTTCAAAAACAGCACCGACGG 165862 | || | || | ||| ||| |||| ||||| ||| |||||||||| Sbjct 594014 CCTCCGGTCT-CTCCTGCCCCGTTGGTTTCAAGAACGGCACCGACGG 594059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177806473859938