Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq47 158 1e-33 seq23 127 2e-24 seq48 102 8e-17 seq46 86.0 6e-12 >seq47 Length=1968370 Score = 158 bits (174), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||| ||| | || ||||| ||||||||||||||||||||||| | ||| || | Sbjct 80850 CGCAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGAGAGAGTGCGACCG 80909 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || |||||||| ||||| ||||| |||| |||||||||||| || || |||||||| || Sbjct 80910 TCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTG 80969 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 |||||||| || ||||| ||| | |||||| |||||||| || || | ||||| Sbjct 80970 TCTTGAATCTTGGCCTTGACATTGTCGATTGTGTCAGACGATTCAACTTCCAACGTAATA 81029 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| | ||| || || || || ||||| Sbjct 81030 GTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 81064 Score = 140 bits (154), Expect = 3e-28 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||| || || || |||||||| ||||||||||| || Sbjct 81066 CCACCACGGAGACGAAGCACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAATCCGAG 81125 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || ||| ||||| |||||||| ||||| |||| ||||||||| || ||||| Sbjct 81126 AGGGTGCGACCGTCCTCGAGTTGTTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGG 81185 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || ||||| || ||||| ||| | ||||| || || || || Sbjct 81186 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCAGAGGACTCGACT 81245 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721 || || || || || || ||||| | || || ||||| || ||||| || ||| Sbjct 81246 TCAAGGGTTATAGTCTTTCCGGTAAGTGTCTTGACGAAGATCTGCATGATGCTTT 81300 Score = 116 bits (128), Expect = 4e-21 Identities = 335/512 (65%), Gaps = 5/512 (1%) Strand=Plus/Minus Query 7472 ACGAGCGCGATTACGATTACCGTTATTTTGCCGTAAAAACTTTAAAAAACGGCTACTTGT 7531 |||| ||||||| || ||| || |||| | | || || | || | || ||| Sbjct 706949 ACGATCGCGATTTCGGCTACAACTACTTTGGCTTCAAGACGCTGGAACGTGCTTATTTGC 706890 Query 7532 TGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGG 7591 |||| |||||||| | || || ||| || |||||| || |||| ||||| |||| Sbjct 706889 TGAAGCTCAACGGCAAGATTGCCGAGCGACCGCAGCACATGTTGATGCGTGTGGCTGTGG 706830 Query 7592 GCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAAC 7651 | ||||||||||| || || || | |||| | || || ||| | | |||||| |||| Sbjct 706829 GTATTCACGGCGAGGATATCGAAGGCGCCATTGAGACTTACAACCTCATGTCTGAGAAAT 706770 Query 7652 AGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCG-CCTCAATTGTCC 7710 | ||||| ||||| |||||| |||| ||| || || | || || || |||| Sbjct 706769 ACTTTACCCACGCGAGTCCCACCCTGTTCAACGCCGGTAC-CCCTCGTCCGCAGCTGTCG 706711 Query 7711 TCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGC 7770 || || |||||| | |||||| || || || || ||||| || | || ||| Sbjct 706710 TCCTGCTTTTTGTTGACCATGAAGGAGGATTCGATTGAAGGCATCTATGAAACTCTGAAA 706651 Query 7771 GATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGC 7830 |||| || | |||||||| || || || || ||||| ||| | || | | || Sbjct 706650 ATTTGCTCCCAAATTTCCAAGACCGCGGGTGGCATCGGTCTCAACATCCACCAGATCCGG 706591 Query 7831 GCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTG 7890 || ||| ||||| ||||| || | ||| ||| | | ||| ||| | Sbjct 706590 GCTTCCGGCTCGTACATCGCTGGTACCAATGGTTATTCCAACGGCATCGTGCCTATGCTC 706531 Query 7891 CGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCC 7947 ||||| | ||||||| ||| || |||| || || || || |||||| || || Sbjct 706530 CGCGTTTACAATAACACGGCTCGCTATGTCGATCAAGGTGGCAACAAGCGCCCGGGTGCT 706471 Query 7948 GCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||||| | ||||| |||||| |||| Sbjct 706470 TTCGCCATCTACCTCGAGCCCTGGCACCCGGA 706439 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 |||| || | || |||| || | || |||||||| ||||||||||| |||||||| | Sbjct 80608 TTCCGCCACGCAGACGCAGGACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCG 80667 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 ||| | | | ||| |||||||| ||||| ||||| || | |||||| || || ||| Sbjct 80668 ACAAAG-TCCGTCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGC 80726 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||||||||| || || || || ||| || || | || || || ||||| Sbjct 80727 GGAATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTATCGATCGTATCAGATGATTCG 80786 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || || || || || || || || || ||||||||||| Sbjct 80787 ACCTCTAATGTTATAGTCTTGCCTGTCAAGGTCTTGACAAAAATTTGCAT 80836 >seq23 Length=2864373 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| || || || ||||| ||||| || |||||||| ||| Sbjct 1571570 CCACCACGGAGACGGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAG 1571511 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || | ||| ||||| ||||| || | ||||||||||| || || Sbjct 1571510 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGGA 1571451 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || |||||||| || || ||||| || | | |||||| || || || Sbjct 1571450 ATGCCCTCCTTGTCTTGAATCTTCTGCTTGACGTTCTCGATAGAGTCGGAAGACTCGACT 1571391 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || ||||| ||||| || ||||| | || || |||||||| ||||| || Sbjct 1571390 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGTT 1571341 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||||||||||||||||||||||| || | ||| | || |||||||| Sbjct 1571775 GTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGGCCATCCTCGAGCTG 1571716 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| ||||| || | |||||||| || || || ||||| || || ||||| || || Sbjct 1571715 CTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTT 1571656 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || ||||| || | | ||||||||| || || ||||| || || || || || || Sbjct 1571655 CTGCTTGACGTTCTCAATCGAGTCGGACGACTCAACCTCGAGGGTGATAGTCTTGCCAGT 1571596 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || |||||||| Sbjct 1571595 CAAGGTCTTGACAAAGATTTGCAT 1571572 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || || || |||||||| ||||||||||| || || || ||| || Sbjct 1572464 ACAAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGCGTACGACCGTCCTCA 1572405 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| || | |||||||| || || || ||||| || || || ||| Sbjct 1572404 AGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGA 1572345 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || ||||| || | | ||| ||||| || || ||||| || || || || Sbjct 1572344 ATCTTCTGCTTGACGTTCTCAATGGAGTCAGACGACTCAACCTCGAGGGTGATAGTCTTG 1572285 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || ||||| Sbjct 1572284 CCAGTCAAGGTCTTGACAAAGATCTGCAT 1572256 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || ||||| || ||||||||||| | ||| | || || ||||| Sbjct 1572002 TGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGC 1571943 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| || ||||| | ||||||||| || || || || || || || ||||| || || Sbjct 1571942 TTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTC 1571883 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || || | | ||| || || || || ||||| || ||||| || ||||| Sbjct 1571882 TGCTTCACATTTTCGATAGAGTCAGATGACTCAACTTCGAGGGTGATGGTCTTGCCGGTC 1571823 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| ||||| Sbjct 1571822 AAGGTCTTGACGAAAATCTGCAT 1571800 >seq48 Length=1814144 Score = 102 bits (112), Expect = 8e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| || || || ||||| |||||||||||||| | Sbjct 1641605 CCACCACGGAGACGGAGCACAAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAA 1641546 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| ||||| || ||||||| ||||||||| || || || Sbjct 1641545 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGGGGA 1641486 Query 134607 ATGCCTTCTTT 134617 |||||||| || Sbjct 1641485 ATGCCTTCATT 1641475 >seq46 Length=2048726 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| || || || ||||| || |||||||||||| | Sbjct 962338 CCACCACGGAGACGGAGCACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 962397 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| || ||||||| |||||||||||| || || Sbjct 962398 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGA 962457 Query 134607 ATGCCTT 134613 || |||| Sbjct 962458 ATACCTT 962464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398090443480