Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq34 158 2e-33 >seq34 Length=2752318 Score = 158 bits (174), Expect = 2e-33 Identities = 374/554 (68%), Gaps = 16/554 (3%) Strand=Plus/Plus Query 161246 GATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTCCTAGGTA-TGACAGATAG 161304 || |||||||| || || || | ||||| || | || | ||| | | |||||||| | Sbjct 1210487 GACGCTCTGGGTACACTTCGACTGTTGGACGCGATCCG-CACCTGCGGACTGACAGATCG 1210545 Query 161305 GGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACA 161364 |||||| ||||||| ||||| ||| || | ||||| |||| ||||| || || Sbjct 1210546 CGTCCGTTTCTACCAAGCATCTACCTCAGAACTCTATGGAAAGGTAGTCGAGACGCCGCA 1210605 Query 161365 GAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATA 161424 || || || || ||||| || ||||| || || |||||||| || ||||| ||||| || Sbjct 1210606 AAAGGAGACGACGCCTTTTTATCCACGGTCACCTTATGGCGTCGCCAAACTGTATGGCTA 1210665 Query 161425 TTGGATT---GTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCT 161481 |||||| ||||| |||| | ||| ||| ||| | || | | || || | Sbjct 1210666 TTGGATCACCGTAAA---CTACCGGGAGTCTTACAACATGTATGCGTGCAACGGCATCTT 1210722 Query 161482 ATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGG 161541 |||||||||||| || || || || || || || |||||||| ||||| || ||| Sbjct 1210723 ATTCAACCATGAATCCCCCCGCCGTGGACGTACGTTTGTAACCCGCAAGATCACACGGGC 1210782 Query 161542 ACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAG 161601 | || |||| | || ||| || || || || || || || | || | Sbjct 1210783 TGTGGCCGATATTCATTTGGGGAGACAAGAATGCCTGTATCTTGGCAACATTGACGCGCA 1210842 Query 161602 ACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGA 161661 || |||||||| ||||| |||||| | || | |||||| | ||| | || || || Sbjct 1210843 GCGCGATTGGGGCCATGCACGTGACTATATTGAAGGCATGTGGCTCATGCTGCAGCACGA 1210902 Query 161662 AACTCCTGATGACTATGTGATTGCCACAGGTAAAGAGT-ATTCAGT--GAAGGACT-TTG 161717 | || || |||| |||| |||| |||||| ||| | ||||||| | || | ||| Sbjct 1210903 TTCACCGGAGGACTTTGTGCTTGCGACAGGT-GAGACTCATTCAGTGCGCAGTTTTGTTG 1210961 Query 161718 TAGAGGCATCTGCTGAATACTTTGGTATGAAGATTGAGTGGCAGGGTGAAGGATTGGATG 161777 | |||| | ||||| || || |||||| ||||| | || ||||| || ||| Sbjct 1210962 AAAAGGCGTTTGCTG-TGAC--GGGCCGCAAGATTAAGTGGGAAGGCGAAGGCGTGAATG 1211018 Query 161778 AAGTGGGTATAGAT 161791 ||||||| | |||| Sbjct 1211019 AAGTGGGCAAAGAT 1211032 Score = 122 bits (134), Expect = 1e-22 Identities = 259/387 (67%), Gaps = 0/387 (0%) Strand=Plus/Plus Query 161306 GTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAG 161365 ||||| |||||||||| || ||| ||| | || || ||| ||||| || ||| Sbjct 1903455 GTCCGCTTCTACCAGGCCTCGACCTCCGAGCTTTACGGTAAGGTCGTCGAGACTCCCCAG 1903514 Query 161366 AAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATAT 161425 || || || || ||||||||||| || || || ||||| || || || ||||| || || Sbjct 1903515 AAGGAGACCACGCCTTTCTACCCCCGCTCGCCCTATGGTGTTGCCAAGCTCTACGGTTAC 1903574 Query 161426 TGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTC 161485 ||||| |||||| | ||| |||| ||| ||||| | | ||||| || ||| Sbjct 1903575 TGGATCACCGTTAACTACCGTGAGTCCTATGACATGTACGCCTGCAACGGTATCCTCTTC 1903634 Query 161486 AACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTA 161545 ||||| ||||| || || || || || || || ||||| ||||| | | | | Sbjct 1903635 AACCACGAGTCCCCCCGCCGTGGCCGCACCTTTGTCACCCGCAAGATCTCCCGCGCCGTC 1903694 Query 161546 TCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGA 161605 | ||| | || | || || ||||| ||||| ||||| | | | | || Sbjct 1903695 GCTGATATCCATCTTGGTCGTCAAGACTGTCTCTACCTTGGTAACATTGATGCCAAGCGT 1903754 Query 161606 GATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACT 161665 ||||||||||||||| ||||| || |||| ||||||| | ||| | || || || Sbjct 1903755 GATTGGGGTCATGCTCGTGACTACGTCGAGGGTATGTGGCTCATGCTCCAGCAAGACCAG 1903814 Query 161666 CCTGATGACTATGTGATTGCCACAGGT 161692 || || |||| ||| | || || ||| Sbjct 1903815 CCCGAGGACTTTGTCCTGGCTACGGGT 1903841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729929152918120