Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq47 125 6e-24 seq23 105 6e-18 >seq47 Length=1968370 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| |||||||| | ||| || || ||||||||||||||||| | Sbjct 80610 CCGCCACGCAGACGCAGGACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGAC 80669 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || |||| |||||||| || || || | || ||||||||||| || ||||| Sbjct 80670 AAAGTCCGTCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGA 80729 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| ||||||| ||||| | || | || || | | ||| || Sbjct 80730 ATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTATCGATCGTATCAGATGATTCGACC 80789 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||||||| ||||| |||| || || ||||| |||||||| Sbjct 80790 TCTAATGTTATAGTCTTGCCTGTCAAGGTCTTGACAAAAATTTGCAT 80836 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| || |||| |||||||| | ||| || || |||||||| |||||||| Sbjct 80836 TGCCGCCGCGTAAGCGCAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCG 80895 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| |||| |||||||| || || || | || |||||||| ||||| || | Sbjct 80896 AGAGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGAG 80955 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || |||||| || | | || | ||||| | | ||||| Sbjct 80956 GAATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCGATTGTGTCAGACGATTCAA 81015 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| | || |||| ||||| |||||||| ||||||||||| |||||| Sbjct 81016 CTTCCAACGTAATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCATA 81065 >seq23 Length=2864373 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||||||| | ||||| || || || || |||||||| Sbjct 1572026 CCACCACGCAGGCGGAGAACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAG 1571967 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| ||||| || || ||| ||||||||||||| || ||||| || Sbjct 1571966 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGA 1571907 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || |||||| | |||| |||| | || ||| | | |||||| Sbjct 1571906 ATACCCTCCTTGTCTTGGATCTTCTGCTTCACATTTTCGATAGAGTCAGATGACTCAACT 1571847 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | ||||| |||| || || || || || |||||| Sbjct 1571846 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCATA 1571799 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || |||||||| ||||| || Sbjct 1571798 CCACCACGCAGGCGGAGAACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAG 1571739 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || |||||||| || || || | ||||| ||||| || ||||| || Sbjct 1571738 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGG 1571679 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| | || | | | || | | ||| | | ||||| Sbjct 1571678 ATGCCCTCCTTGTCTTGGATCTTCTGCTTGACGTTCTCAATCGAGTCGGACGACTCAACC 1571619 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || |||| ||||| |||| || || ||||||||||||||| Sbjct 1571618 TCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATA 1571571 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| | | |||| | || |||||||| || || Sbjct 1572224 GTGGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 1572165 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || |||||||| || ||||| || | |||||| || || |||||| | ||| Sbjct 1572164 GCAAAGATAAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTCTGCTTC 1572105 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | | ||| | | ||||| || || || || | ||||| ||||| || Sbjct 1572104 ACATTTTCAATCGAGTCAGATGACTCAACCTCAAGTGTAATGGTCTTGCCGGTCAGCGTC 1572045 Query 27231 TTCACAAAGATTTGCATA 27248 || || || || |||||| Sbjct 1572044 TTGACGAAAATCTGCATA 1572027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934146234488