Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq47 205 1e-47 seq49 107 2e-18 seq45 86.0 8e-12 >seq47 Length=1968370 Score = 205 bits (226), Expect = 1e-47 Identities = 1109/1747 (63%), Gaps = 52/1747 (3%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 |||||||||||||| || |||||||| || | ||||| | || | |||||| | Sbjct 705140 CGGAGATAGTACATGCCTGTCTTGAGACCCTTCTTCCAGCCATAAAAGTGCATACTCGTC 705199 Query 110423 AGCTTGGACATCGTTGGACTTTCCA-TGAAGAGGTTCATACTTTGACTTTGGTCAATGAA 110481 || ||| || ||||| | ||| | |||| ||| | |||||| || |||||||| || Sbjct 705200 AGTTTGC-CAAAGTTGGGTTCGCCAATAAAGATGTTTAGACTTTGGCTCTGGTCAATAAA 705258 Query 110482 GCGCCCCCGTTGTGCCGCCATATCAATGACAT--CCTTCATCTTAATTTCCCAAACTGTG 110539 | || || | || ||||| ||||||| || | || | | |||||| || || Sbjct 705259 GGCGCCGCGGTCAGCTGCCATGTCAATGATATGACGTTG--CGAGAGTTCCCATACGGTC 705316 Query 110540 CGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCC---CC 110596 ||||| |||| | || ||||||| | ||| ||||||||| || | Sbjct 705317 TTGTAGAGGGCTTTGAGCTTTTCGGGGATATTAGGGATGCGCTGGATGGAGCCATTGTCG 705376 Query 110597 GCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTG 110656 | | | | |||| | ||| | ||| | | ||| || || || | || || ||| Sbjct 705377 GACATGATCATG---TTCTTGACATCGTCGTTCCACAGGCCCATGTCAACCAGATCCTTG 705433 Query 110657 ACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTT 110716 | | | ||| || || || ||||| || | | | ||| | ||| Sbjct 705434 AGCAACCACGGGTTAACGATTTGGAATTCACCGGCCAAAACGCGACGGGTGTACAGGTTG 705493 Query 110717 GTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGC 110776 | ||||| ||||| ||||||||||| |||| || || | || ||||| || ||| Sbjct 705494 GACGTGTAAGGTTCGAAGCATTCATTGAAGCCCAGAATCTGCGAAGTTGAGGCAGTCGGC 705553 Query 110777 ATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA 110836 || ||||||| || || |||||| | || ||| | || ||||||| || Sbjct 705554 ATGGGTGCCACCAGCAGCGAGTTACGCAAGCCAGTCTGCGCAATCTTGGCCTTGAGGGCA 705613 Query 110837 TCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTT 110894 ||||||| | | || | | ||| |||| |||| | | |||| |||| | || || | Sbjct 705614 GCCCAGTCCCA-TAGATCGGTGGGTGTCACGTTCC-AGAAGTCATACTGCAAGACGCCCT 705671 Query 110895 GGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 110954 |||||| || ||| || | || | |||| ||| | | || | || | Sbjct 705672 TGGACGCTGGGCTACCTTCGTAAGTCGCGTAGGGACCGTTCAGGACCGCGAGCTCGTTGG 705731 Query 110955 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 111014 |||||||| | || || || ||||| |||||||| || || | | |||||| | Sbjct 705732 AAGCCTCCAGAGCGGCATGGTAGATGGTCTCAAAGATCTGACTGTTGAGTTTCTTGGCCT 705791 Query 111015 CATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCA 111074 | || ||||||| |||||| ||| ||||| |||| || ||||| | ||||| | Sbjct 705792 CGGGCGAGTCAAATGGGTAGCGCATCAACATAAAGGCATCGGCAAGACCGTTGACACCTA 705851 Query 111075 AACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAAT 111131 ||| || || | || ||||| || || ||| ||| ||| || ||||| | | Sbjct 705852 GACCGATGGGACGATGACGCATGTTTGAG---CGCTCAGCTTCAGGCACAGGATAGTAGT 705908 Query 111132 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 111191 | |||| || | ||||| || || |||| ||| | || || | |||| Sbjct 705909 TGATGTCGATAATCTTGTTTAAGTTGCGCGTCACAACCTTGACAACATCGTGCAACTTTT 705968 Query 111192 CATAATCAAA-AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGC--GATTGATGCCA 111248 ||||||| | | || | |||| |||| | | || | || || || |||| Sbjct 705969 GGAAATCAAACACTTCGCGATTCTT----GACAAAGGTGGGCAAAGCCAGACTG--GCCA 706022 Query 111249 AATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGG 111308 ||||||| ||||| || ||| | | |||||| | || |||||||| | ||| Sbjct 706023 AATTGCATACAGCTACTTCGTCCGGACTGGAGTACTCGACGATCTCTGTACAGAGATTGC 706082 Query 111309 AACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGA 111368 | ||| ||||| ||||| |||| ||||| || ||| ||||| |||||||| | Sbjct 706083 TGCACTTGATCGTGCCCAAGTTCTGCTGGTTTGATTTGCGGTTACACGCGTCCTTGTACA 706142 Query 111369 GCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCG 111427 ||||| |||| || ||||| || |||| | | || || | ||| | | || | | Sbjct 706143 GCATGAAGGGGCCACCTGTCTCGGTTTGTGCCTCCAAGATGGCATACCAGAGCTTCTGTG 706202 Query 111428 GCTGGTACAA--TGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAA 111485 || | |||| ||||| || || || || ||||| | ||| || | |||| Sbjct 706203 CCTTG-ACAACTTGGCG--CGCGCGACCTTCACGTTCGTATTGATGGTACAGCTCCTCAA 706259 Query 111486 ACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATT 111545 ||| ||| ||| | | ||| ||||||||||| | | ||| ||||| | ||||| Sbjct 706260 ACTTCTCGCCCCACACCTCGTGAAGACCTGGTGCTTCGCTTGGGCAGAACAAGCTCCATT 706319 Query 111546 GACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGAT 111605 |||| || || || |||||||||||||| || || ||||| | || | || || | Sbjct 706320 CACCATTCTCTTCGACACGCTTCATGAAAAGATCAGGGATCCATAAGGCATAGAACAGGT 706379 Query 111606 CTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATAT 111665 | | ||| ||| || | || ||| || | || |||||| | | || Sbjct 706380 CACGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGGAGGTCCAGGAACGAGAACACAT 706439 Query 111666 CCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTT 111719 ||| |||||| ||||| || |||| |||| || ||| | ||| ||| ||| Sbjct 706440 CCGGGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCC---GGGCGCTTGTTGCCACCTT 706496 Query 111720 GATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATT 111779 ||| |||||||| || ||| || | ||||| ||||| || | || || | || | Sbjct 706497 GATCGACATAGCGAGCCGTGTTATTGTAAACGCGGAGCATAGGCACGATGCCGTTGGAAT 706556 Query 111780 GACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCC 111837 |||||| || || ||| |||||| | || | | | ||||||| | || Sbjct 706557 AACCATTGGTACCAGCGATGTACGAGCCGGA--AGCCCGGATCTGGTGGATGTTGAGACC 706614 Query 111838 AATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTT 111897 || || || || ||| || ||||| | || | |||||| ||||||| || | Sbjct 706615 GATGCCACCCGCGGTCTTGGAAATTTGGGAGCAAATTTTCAGAGTTTCATAGATGCCTTC 706674 Query 111898 GATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACC 111957 || || |||||||| ||| | | ||||| |||| |||||| | || ||||| Sbjct 706675 AATCGAATCCTCCTTCATGGTCAACAAAAAGCAGGACGACAGCTGCGGACGAGGGGTACC 706734 Query 111958 AGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATACCTTGGGACATCTTGTCGTATG 112016 || ||||| ||||| || | ||||| | || || | | ||||| || ||| | Sbjct 706735 GGCGTTGAACAGGGTGGGACTCGCGTGGGTAAAGTATTTC-TCAGACATGAGGTTGTAAG 706793 Query 112017 TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGT 112076 |||| | | | || || || || ||||| || || | || || ||||| ||||||| Sbjct 706794 TCTCAATGGCGCCTTCGATATCCTCGCCGTGAATACCCACAGCCACACGCATCAACATGT 706853 Query 112077 ACTGTGG 112083 ||| || Sbjct 706854 GCTGCGG 706860 >seq49 Length=1681262 Score = 107 bits (118), Expect = 2e-18 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 111927 AGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAA 111986 |||| ||||| | ||| || | ||||||||| ||||||||||||||||| ||||| Sbjct 830014 AGCAGCTGGAGAGCTGAGGACGGTTTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGTG 830073 Query 111987 TGAACATA-CCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 112045 |||| ||| ||||||||| ||||||||| | | | |||||||||| ||| Sbjct 830074 TGAA-ATATTTTTGGGACATGAAACTGTATGTCTCGATAGCCGCATCAATGTCTGTGCCG 830132 Query 112046 TGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 |||||||||| ||||| ||||||| ||||| ||| || Sbjct 830133 TGGATGCCGAGGGCGACGCGCATGATCATGTGCTGGGG 830170 >seq45 Length=2374188 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||||||||| || || || || || || || || ||| ||||| Sbjct 1436327 GCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAGACCA 1436268 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| ||||| |||||||| | |||| | || | | || || || |||||||||||| Sbjct 1436267 GGCATCAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAAGATA 1436208 Query 122779 CCCTCCACACACGCAAACGCAA 122800 ||||||||| ||||| |||| Sbjct 1436207 CCCTCCACAGCAGCAAAAGCAA 1436186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031615330400