Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq47 187 3e-42 seq45 123 3e-23 seq49 93.3 5e-14 >seq47 Length=1968370 Score = 187 bits (206), Expect = 3e-42 Identities = 1107/1745 (63%), Gaps = 46/1745 (3%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||| |||||||| || |||||||| |||| ||||||| |||| | ||||| | | Sbjct 705140 CGGAGATAGTACATGCCTGTCTTGAGACCCTTCTTCCAGCCATAAAAGTGCATACTCGTC 705199 Query 117897 AACTTGGAGAGGGTTGGACTTTCCA-TGAAGAGGTTCATACTTTGGGATTGATCGATGAA 117955 | ||| | | |||| | ||| | |||| ||| | ||||||| || || || || Sbjct 705200 AGTTTGCCAAAG-TTGGGTTCGCCAATAAAGATGTTTAGACTTTGGCTCTGGTCAATAAA 705258 Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACAT--CCTTCATCTTGATTTCCCACACAGTC 118013 | || || || || ||||| ||||| | || | || | || |||||| || ||| Sbjct 705259 GGCGCCGCGGTCAGCTGCCATGTCAATGATATGACGTTG--CGAGAGTTCCCATACGGTC 705316 Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCAC---CC 118070 |||||||| || | | || ||||||| ||| |||||||| ||| | Sbjct 705317 TTGTAGAGGGCTTTGAGCTTTTCGGGGATATTAGGGATGCGCTGGATGGAGCCATTGTCG 705376 Query 118071 GCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 118130 | | ||| |||| | ||| | ||| | ||| || || || | ||||||| Sbjct 705377 GACATGATCATG---TTCTTGACATCGTCGTTCCACAGGCCCATGTCAACCAGATCCTTG 705433 Query 118131 ACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 118190 | | | || || | || ||||| || | ||| | || | ||| Sbjct 705434 AGCAACCACGGGTTAACGATTTGGAATTCACCGGCCAAAACGCGACGGGTGTACAGGTTG 705493 Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250 | |||||| || || ||||| |||||| |||| || || | || ||||| || ||| Sbjct 705494 GACGTGTAAGGTTCGAAGCATTCATTGAAGCCCAGAATCTGCGAAGTTGAGGCAGTCGGC 705553 Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310 |||||||||| || || |||||| | || | | | ||| ||||||| || Sbjct 705554 ATGGGTGCCACCAGCAGCGAGTTACGCAAGCCAGTCTGCGCAATCTTGGCCTTGAGGGCA 705613 Query 118311 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCC-TGCCACATATCAAACTGGAGGATACCTTG 118369 ||||||| | | || | || | | | | ||| | ||| |||| | || || | Sbjct 705614 GCCCAGTCCCA-TAGATCGGTGGGTGTCACGTTCCAGAAGTCATACTGCAAGACGCCCTT 705672 Query 118370 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCT 118429 ||||||||| || || | ||| | || || || | | |||| | ||| | Sbjct 705673 GGACGCTGGGCTACCTTCGTAAGTCGCGTAGGGACCGTTCAGGACCGCGAGCTCGTTGGA 705732 Query 118430 CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 118489 ||||| || || || || || || || ||||| || || || | | ||||||||| Sbjct 705733 AGCCTCCAGAGCGGCATGGTAGATGGTCTCAAAGATCTGACTGTTGAGTTTCTTGGCCTC 705792 Query 118490 GTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 118549 | || ||||| | | || ||| ||||| |||| || ||||| | |||||| || Sbjct 705793 GGGCGAGTCAAATGGGTAGCGCATCAACATAAAGGCATCGGCAAGACCGTTGACACCTAG 705852 Query 118550 GCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCT 118609 || || || ||||| | ||| || || | ||| ||| ||||| | || | Sbjct 705853 ACCGATGGGACGATGACGCATGTTTGAGCGCTCAGCTTCAGGCACAGGATAGTAGTTGAT 705912 Query 118610 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 118669 ||||||| | | |||| || || |||||||| | || || | ||||| | | Sbjct 705913 GTCGATAATCTTGTTTAAGTTGCGCGTCACAACCTTGACAACATCGTGCAACTTTTGGAA 705972 Query 118670 ATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC--GCCAGATT 118726 |||||| ||| || | |||| |||| | | || | || | ||| |||| ||| Sbjct 705973 ATCAAACACTTCGCGATTCTT----GACAAAGGTGGGCAAAGCCA--GACTGGCCAAATT 706026 Query 118727 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACT 118786 || |||| || ||| | | |||||| | || || || || | || | Sbjct 706027 GCATACAGCTACTTCGTCCGGACTGGAGTACTCGACGATCTCTGTACAGAGATTGCTGCA 706086 Query 118787 CTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCAT 118846 ||| || ||||||||||||| || ||||| || ||||||||| |||||||| ||||| Sbjct 706087 CTTGATCGTGCCCAAGTTCTGCTGGTTTGATTTGCGGTTACACGCGTCCTTGTACAGCAT 706146 Query 118847 GTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGC-T 118904 | | || || ||||| ||||| | || | || || | ||||| | || | | | Sbjct 706147 GAAGGGGCCACCTGTCTCGGTTTGTGCCTCCAAGATGGCATACCAGAGCTTCTGTGCCTT 706206 Query 118905 GGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCT 118964 | || ||||| || || || || ||||| | ||| || | ||||||| Sbjct 706207 GACAACTTGGCG--CGCGCGACCTTCACGTTCGTATTGATGGTACAGCTCCTCAAACTTC 706264 Query 118965 TCACCCACGGCCTC-TGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACC 119023 || ||| |||| ||| || |||||||| | ||||||||| | ||||| ||| Sbjct 706265 TCGCCCCACACCTCGTGA-AGACCTGGTGCTTCGCTTGGGCAGAACAAGCTCCATTCACC 706323 Query 119024 ACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 119083 | ||| || || ||||||||||| || || |||||||| | || |||| || || || Sbjct 706324 ATTCTCTTCGACACGCTTCATGAAAAGATCAGGGATCCATAAGGCATAGAACAGGTCACG 706383 Query 119084 ACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCG 119142 |||| || || | | || || || || | |||| || | | ||||| Sbjct 706384 CGCGCGATTCTCCTCCTTGCCGGTG-TTCTTGCGGAGGTCCAGGAACGAGAACACATCCG 706442 Query 119143 CGTGCCACGGTTCCAGGTACACCGCGATTG-ACCC-----CTTACGACGACCAGCCTGGT 119196 |||||| || || ||||| | |||| | |||| ||| | | ||| | || | Sbjct 706443 GGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGGCGCTT--GTTG-CCACCTTGAT 706499 Query 119197 TTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGC 119256 ||||| | || ||| || | || || ||||| || | ||| || | ||| | | Sbjct 706500 CGACATAGCGAGCCGTGTTATTGTAAACGCGGAGCATAGGCACGATGCCGTTGGAATAAC 706559 Query 119257 CATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAAT 119314 |||| || || ||| |||||| | | || | || | |||||||| | ||| || Sbjct 706560 CATTGGTACCAGCGATGTACGAGCCGGA--AGCCCGGATCTGGTGGATGTTGAGACCGAT 706617 Query 119315 ACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGAT 119374 || || || ||| || ||||| | ||| | ||| | | ||||| || || || Sbjct 706618 GCCACCCGCGGTCTTGGAAATTTGGGAGCAAATTTTCAGAGTTTCATAGATGCCTTCAAT 706677 Query 119375 CGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGC 119434 ||| || |||| | | | | |||||| ||||| || || | || ||||| || Sbjct 706678 CGAATCCTCCTTCATGGTCAACAAAAAGCAGGACGACAGCTGCGGACGAGGGGTACCGGC 706737 Query 119435 GTTGAAGAGAGTTGGTGTCGCGTGGATGAA-CATACCTTGGGACATCTTGTCGTAGGTCT 119493 |||||| || || || |||||||| | || || | | ||||| || ||| |||| Sbjct 706738 GTTGAACAGGGTGGGACTCGCGTGGGTAAAGTATTTC-TCAGACATGAGGTTGTAAGTCT 706796 Query 119494 CCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATT 119553 | | | || | || || || ||||||||||| | | || ||||| ||||||| | Sbjct 706797 CAATGGCGCCTTCGATATCCTCGCCGTGAATACCCACAGCCACACGCATCAACATGTGCT 706856 Query 119554 GGGGT 119558 | ||| Sbjct 706857 GCGGT 706861 >seq45 Length=2374188 Score = 123 bits (136), Expect = 3e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||||||||| |||||||| |||||||| || || ||| |||||| Sbjct 1436327 GCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAGACCA 1436268 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| ||||| |||||||| | ||| || || | ||| ||||||||||||||||| Sbjct 1436267 GGCATCAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAAGATA 1436208 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 130173 ||||||||| || || |||| | |||||||||||| Sbjct 1436207 CCCTCCACAGCAGCAAAAGCAACCAAACGCTCAGCAAA 1436170 >seq49 Length=1681262 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 119361 TAGATCCCATCGATCGAGTCACC-CTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGG 119419 ||||| || ||||| |||| | || || || || ||| ||||||| || | ||||| Sbjct 829974 TAGATGCCCTCGATACTGTCATCTCTCATCTG-GACGAGATAGCAGCTGGAGAGCTGAGG 830032 Query 119420 CCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATA-CCTTGGGACA 119478 | | |||||||||||||||||| |||||||||||||| |||| ||| |||||||| Sbjct 830033 ACGGTTTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGTGTGAA-ATATTTTTGGGACA 830091 Query 119479 TCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCC 119538 | ||| ||||| | | || ||||||| ||||| || |||| | ||| | Sbjct 830092 TGAAACTGTATGTCTCGATAGCCGCATCAATGTCTGTGCCGTGGATGCCGAGGGCGACGC 830151 Query 119539 GCATAAACATGTATTGGGG 119557 |||| | ||||| ||||| Sbjct 830152 GCATGATCATGTGCTGGGG 830170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434821208440