Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq47 181 1e-40 seq45 129 7e-25 seq49 93.3 5e-14 >seq47 Length=1968370 Score = 181 bits (200), Expect = 1e-40 Identities = 895/1398 (64%), Gaps = 54/1398 (4%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||||| ||||| ||||| | |||||||| || || || || || | | Sbjct 706860 CCGCAGCACATGTTGATGCGTGTGGCTGTGGGTATTCACGGCGAGGATATCGAAGGCGCC 706801 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || ||||| | | || || | ||||| | || ||||| || Sbjct 706800 ATTGAGACTTACAACCTCATGTCTGA-GAAATACTTTACCCACGCGAGTCCCACCCTGTT 706742 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || ||||| || | || || |||| ||||| | | ||| |||||||| Sbjct 706741 CAACGCCGGTACCCCTCGTCCGCAGCTGTCGTCCTGCTTTTTGTTGACCATGAAGGAGGA 706682 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || || | || ||||||| |||||| | || | ||||| || ||| || || Sbjct 706681 TTCGATTGAAGGCATCTATGAAACTCTGAAAATTTGCTCCCAAATTTCCAAGACCGCGGG 706622 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 104518 || || || | ||||||| | | | || | |||||| ||| || || Sbjct 706621 TGGCATCGGTCTCAACATCCACCAGATCCGGGCT--TCCGGCTCGTACATCGCTGGTACC 706564 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 |||||| | || | || || | || ||||| ||||| | || ||| || |||||| Sbjct 706563 AATGGTTATTCCAACGGCATCGTGCCTATGCTCCGCGTTTACAATAACACGGCTCGCTAT 706504 Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || |||||| ||| ||| | ||| || |||| |||| || ||||| ||| Sbjct 706503 GTCGATCAAGGTGGCAACAAGCGCCC---GGGTGCTTTCGCCATCTACCTCGAGCCCTGG 706447 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG----GC 104688 ||| ||||| | | |||||| || | || ||| || | |||||| || Sbjct 706446 CACCCGGATGTGTTCTCGTTCCTGGACCTCCGCAAGAACACCGGCAAGGAGGAGAATCGC 706387 Query 104689 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748 ||| || || || |||| || | ||||| || ||||| ||||||||| | || || Sbjct 706386 GCG----CGTGACCTGTTCTATGCCTTATGGATCCCTGATCTTTTCATGAAGCGTGTCGA 706331 Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT 104808 |||| ||| | ||| | || || ||| | | ||||| ||||| ||| | Sbjct 706330 AGAGAATGGTGAATGGAGCTTGTTCTGCCCAAGCGAAGCACCAGGTCTTCACGAGGTGTG 706271 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC 104868 ||| ||| ||||||| | || ||| | ||||| |||||||| ||| || | Sbjct 706270 GGGCGAGAAGTTTGAGGAGCTGTACCATCAATACGAACGTGAAGGTCGCGCGC--GCCAA 706213 Query 104869 GGTGCCA-GCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | || || | | || | | ||| | || || | || | ||||||||||| ||| Sbjct 706212 GTTGTCAAGGCACAGAAGCTCTGGTATGCCATCTTGGAGGCACAAACCGAGACAGGTGGC 706153 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||| ||||| ||||| ||||||| || || || |||| ||||| | Sbjct 706152 CCCTTCATGCTGTACAAGGACGCGTGTAACCGCAAATCAAACCAGCAGAACTTGGGCACG 706093 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGC 105045 |||||| | ||||||||||||||| ||| | || | | ||| | || || || Sbjct 706092 ATCAAGTGCAGCAATCTCTGTACAGAGATCGTCGAGTACTCCAGTC-CGGACGAAGTAGC 706034 Query 105046 TGTGTGTAACCTCGCATCAATC--GCTCTCCCCAAGTATGTGGATCCAGA--GACAAAGA 105101 ||| || || | || || || ||| | |||| | || || ||| | ||| Sbjct 706033 TGTATGCAATTTGGC--CAGTCTGGCTTTGCCCACCTTTG----TCAAGAATCGCGAAG- 705981 Query 105102 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAG 105161 ||||||| |||| | ||||| ||| || ||| || ||| |||||| Sbjct 705980 TGTTTGATTTCCAAAAGTTGCACGATGTTGTCAAGGTTGTGACGCGCAACTTAAACAAGA 705921 Query 105162 TTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACC 105218 |||| || | || | || || || ||| ||| || || || ||| | || | Sbjct 705920 TTATCGACATCAACTACTATCCTGTGCCTGAAGCTGAGCG---CTCAAACATGCGTCATC 705864 Query 105219 GTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCAT 105278 |||| || ||||| ||||| | ||||| || |||| || || | ||| || ||| Sbjct 705863 GTCCCATCGGTCTAGGTGTCAACGGTCTTGCCGATGCCTTTATGTTGATGCGCTACCCAT 705804 Query 105279 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCG 105338 |||| || ||| || ||| || |||| | || ||||||||||| || || |||| Sbjct 705803 TTGACTCGCCCGAGGCCAAGAAACTCAACAGTCAGATCTTTGAGACCATCTACCATGCCG 705744 Query 105339 CTCTTGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 105396 |||| ||||| | || ||| | || | | | ||||| || | || | || || Sbjct 705743 CTCTGGAGGC--TTCCAACGAGCTCGCGGTCCTGAACGGTCCCTACGCGACTTACGAAGG 705686 Query 105397 TTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TT 105454 | ||||| || |||||| || | || | ||| | | |||| |||| ||| | | | Sbjct 705685 TAGCCCAGCGTC-CAAGGGCGTCTTGCAGTATGACTTCT-GGAACGTGACACCCACCGAT 705628 Query 105455 CACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTC 105514 | | ||||||| || ||||||| || | ||| || | |||||| || Sbjct 705627 CTATGGGACTGGGCTGCCCTCAAGGCCAAGATTGCGCAGACTGGCTTGCGTAACTCGCTG 705568 Query 105515 CTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 105574 || |||| || ||||| || ||||| || | || || |||| ||||||||||| Sbjct 705567 CTGGTGGCACCCATGCCGACTGCCTCAACTTCGCAGATTCTGGGCTTCAATGAATGCTTC 705508 Query 105575 GAACCCTACACGACGAAC 105592 ||||| |||||| | ||| Sbjct 705507 GAACCTTACACGTCCAAC 705490 >seq45 Length=2374188 Score = 129 bits (142), Expect = 7e-25 Identities = 163/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCG 94793 |||||| || || | ||||| || || ||||| | |||||| | |||| || | Sbjct 1436109 AGTTCCCTGCATCAAGAAGAAGGCCGAATGGGCATTCAAGTGGATCTCCTCAAA--CG-G 1436165 Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 | ||||||||||| | | || ||||| ||| |||||||||||||||||||| || Sbjct 1436166 TGTGTTTGCTGAGCGTTTGGTTGCTTTTGCTGCTGTGGAGGGTATCTTCTTCTCTGGCTC 1436225 Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 || | | || | ||||||||||||||| ||||| ||||| ||||| ||| ||| Sbjct 1436226 GTTTGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTGACTTTCAGCAA 1436285 Query 94914 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||| ||||| |||||||| || |||||| || ||||| Sbjct 1436286 CGAGCTCATCTCGCGTGACGAAGGTCTCCACACCGACTTTGC 1436327 >seq49 Length=1681262 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| |||||||||| ||| |||| || || || |||||||||| | | Sbjct 830170 CCCCAGCACATGATCATGCGCGTCGCCCTCGGCATCCACGGCACAGACATTGATGCGGCT 830111 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||||||| ||||||||| ||| |||| ||||| |||||||||||||| Sbjct 830110 ATCGAGACATACAGTTTCATGTCCCAAAAATAT-TTCACACACGCGACACCAACCCTCTT 830052 Query 104341 CAATGCTGGTACA 104353 ||| ||||||||| Sbjct 830051 CAACGCTGGTACA 830039 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/213 (71%), Gaps = 12/213 (6%) Strand=Plus/Minus Query 105737 ATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTC 105796 ||||| |||| | || ||| ||||| ||||| |||||| | | || |||| Sbjct 828314 ATTCCTGATGATCTCAAAAAGCTGTACAAGACAGTGTGGGAACT---GTCTCAGCGTGTC 828258 Query 105797 ATT---GACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTA--TGAATC 105851 ||| ||||||||||| || |||| | ||||| || || ||| ||| |||||| Sbjct 828257 ATTATTGACATGGCCGCCGACCGTGCTGCTTTCATCGACCA--GTCCCAGTCGTTGAATC 828200 Query 105852 TCTTCATGGAA-AGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAG 105910 | ||| | | || | ||| ||| || | || | || |||||| | ||| ||||||| Sbjct 828199 TGTTCGTTGCCGAGCCAAACTATGGCCGA-CTGACGTCGATGCACTTTTACTCTTGGAAG 828141 Query 105911 AAGGGTCTCAAAACGGGGATGTATTACCTCCGA 105943 ||||||||||| ||||| ||||||||||| ||| Sbjct 828140 AAGGGTCTCAAGACGGGCATGTATTACCTTCGA 828108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260442752760