Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017-
04-20] 49 sequences; 30,745,403 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq47 185 1e-41
seq34 134 2e-26
seq49 116 4e-21
>seq47
Length=1968370
Score = 185 bits (204), Expect = 1e-41
Identities = 345/507 (68%), Gaps = 0/507 (0%)
Strand=Plus/Minus
Query 53192 TTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTAC 53251
|| ||||| || || ||||||| ||||| || || | | | | |||||| |||
Sbjct 706848 TTGATGCGTGTGGCTGTGGGTATTCACGGCGAGGATATCGAAGGCGCCATTGAGACTTAC 706789
Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311
|| | ||| | || |||||||| ||||| | || |||||||||||||| |||||
Sbjct 706788 AACCTCATGTCTGAGAAATACTTTACCCACGCGAGTCCCACCCTGTTCAACGCCGGTACC 706729
Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371
|| || ||| ||||| |||||| || || | |||||||| || ||||| || |||
Sbjct 706728 CCTCGTCCGCAGCTGTCGTCCTGCTTTTTGTTGACCATGAAGGAGGATTCGATTGAAGGC 706669
Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431
||||| || || || || || |||| || |||||| ||||||| |||||| ||
Sbjct 706668 ATCTATGAAACTCTGAAAATTTGCTCCCAAATTTCCAAGACCGCGGGTGGCATCGGTCTC 706609
Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491
|| | | |||| || |||| | ||| || || || || || |
Sbjct 706608 AACATCCACCAGATCCGGGCTTCCGGCTCGTACATCGCTGGTACCAATGGTTATTCCAAC 706549
Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551
|| |||||||||||||||||||| | ||| |||||||| || || ||| | || |||||
Sbjct 706548 GGCATCGTGCCTATGCTCCGCGTTTACAATAACACGGCTCGCTATGTCGATCAAGGTGGC 706489
Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611
|||||| ||| | |||||||||||||||||||| |||||| | || | | |
Sbjct 706488 AACAAGCGCCCGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACCCGGATGTGTTCTCG 706429
Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671
|| || || || || ||| || | || |||| ||| |||||||||||
Sbjct 706428 TTCCTGGACCTCCGCAAGAACACCGGCAAGGAGGAGAATCGCGCGCGTGACCTGTTCTAT 706369
Query 53672 GCTCTGTGGATTCCGGACCTCTTCATG 53698
|| | ||||| || || || ||||||
Sbjct 706368 GCCTTATGGATCCCTGATCTTTTCATG 706342
Score = 91.5 bits (100), Expect = 2e-13
Identities = 114/154 (74%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834
||||||||| ||||| || || || | || |||||| ||| ||| ||||||||
Sbjct 705285 ATTGACATGGCAGCTGACCGCGGCGCCTTTATTGACCAGAGCCAAAGTCTAAACATCTTT 705226
Query 55835 AT-GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893
|| || ||| || | |||| || | || ||||||||||| || |||||||||||
Sbjct 705225 ATTGGCGAACCCAACTTTGGCAAACT-GACGAGTATGCACTTTTATGGCTGGAAGAAGGG 705167
Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGACCCGC 55927
|||||||| || ||||||||||| || || |||
Sbjct 705166 TCTCAAGACAGGCATGTACTATCTCCGCACTCGC 705133
>seq34
Length=2752318
Score = 134 bits (148), Expect = 2e-26
Identities = 355/535 (66%), Gaps = 19/535 (4%)
Strand=Plus/Minus
Query 158959 TGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGG---ACCGGGCTGTTGGAGCATGAGC 159015
|| ||||| || ||||||| |||||||||||| || | || |||| |||||||||
Sbjct 1210941 TGAGTCTCACCTGTCGCAAGCACAAAGTCCTCCGGTGAATCGTGCTGC---AGCATGAGC 1210885
Query 159016 CACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCG 159075
|||||| | || | || || | || || ||||| ||||||| || || ||||| ||
Sbjct 1210884 CACATGCCTTCAATATAGTCACGTGCATGGCCCCAATCGCGCTGCGCGTCAATGTTGCCA 1210825
Query 159076 AGCTCGATGA---CTTTTCCAGACTTTTTCCACTCAGCCAGACCGAGCGTGATCTTGCGC 159132
|| | | | ||| || | | || |||| | | | |||||||||||
Sbjct 1210824 AGATACAGGCATTCTTGTCTCCCCAAATGAATATCGGCCACAGCCCGTGTGATCTTGCGG 1210765
Query 159133 GTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCG 159192
|| |||||| ||| || || || |||||||| || | |||||| | || ||
Sbjct 1210764 GTTACAAACGTACGTCCACGGCGGGGGGATTCATGGTTGAATAAGATGCCGTTGCACGCA 1210705
Query 159193 AACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGGAGACG 159252
||| ||| || ||||| ||||| ||| || ||||| || ||| | || |||| ||||
Sbjct 1210704 TACATGTTGTAAGACTCCCGGTAGTTTACGGTGATCCAATAGCCATACAGTTTGGCGACG 1210645
Query 159253 CCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTGAATTGGTTCCTGAACCTTT 159312
|| || || ||| |||||||| || ||| ||| ||||| | || ||||||
Sbjct 1210644 CCATAAGGTGACCGTGGATAAAAAGGCGTCGTCTCCTTTTGCGGCGTCTCGACTACCTTT 1210585
Query 159313 CCAAACATTTCACTCGTCCCAGCCTGATAAAATTTGA----ATTTAGAAACAAAATTGAA 159368
||| | | ||| || || || || || || || | || |
Sbjct 1210584 CCATAGAGTTCTGAGGTAGATGCTTGGTAGAAACGGACGCGATCT---GTCAGTCCGCAG 1210528
Query 159369 TTGACGAATTGCTTCAAGAATTCGAAGGGTACCCATGGCGTCGACGTTCGCC-GTGTACT 159427
|| || || || || | | |||||| ||||||| ||||||||| ||||| |||||||
Sbjct 1210527 GTG-CGGATCGCGTCCAACAGTCGAAGTGTACCCAGAGCGTCGACG-TCGCCGGTGTACT 1210470
Query 159428 CGGGCTGCTCAAAAGAGAGCTTCACGTGTGACTGGGCTCCGAGGTTATAGACCTC 159482
||| | ||||| || | ||| ||||| ||||| ||| | | ||| ||||||||
Sbjct 1210469 CGGACATGTCAAATGACACCTTGACGTGAGACTGAGCTGCCAAGTTGTAGACCTC 1210415
Score = 134 bits (148), Expect = 2e-26
Identities = 363/545 (67%), Gaps = 19/545 (3%)
Strand=Plus/Minus
Query 158949 GCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCT-GTTGGA 159007
||||| |||| ||||| || || || | ||||||||||| || | || || | ||||
Sbjct 1903859 GCGGACAGTGTGGGTCTCACCCGTAGCCAGGACAAAGTCCTCGGG-CTGGTCTTGCTGGA 1903801
Query 159008 GCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCA 159067
||||||||||||| |||||||||| || | || |||||||| || ||||||||||| |
Sbjct 1903800 GCATGAGCCACATACCCTCGACGTAGTCACGAGCATGACCCCAATCACGCTTGGCATCAA 1903741
Query 159068 TGTTCCCGAGCTCGATGAC--TTTTCCAGAC--TTTTTCCACTCAGCCAGACCGAGCGTG 159123
|||| || || | || ||| | || ||| | ||||| | || | | |
Sbjct 1903740 TGTTACCAAGGTAGA-GACAGTCTTGACGACCAAGATGGATATCAGCGACGGCGCGGGAG 1903682
Query 159124 ATCTTGCGCGTCACAAACTCTGC-TCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCC 159182
|||||||| || ||||| ||| || || || ||||| ||||| || || || ||
Sbjct 1903681 ATCTTGCGGGTGACAAA-GGTGCGGCCACGGCGGGGGGACTCGTGGTTGAAGAGGATACC 1903623
Query 159183 GGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAG 159242
| | || ||| ||| || ||||||||| ||||| || || |||||||| || ||||
Sbjct 1903622 GTTGCAGGCGTACATGTCATAGGACTCACGGTAGTTAACGGTGATCCAGTAACCGTAGAG 1903563
Query 159243 CTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTGAATTGGTTC 159302
||||| || || || || || || || || || || ||| || || | ||
Sbjct 1903562 CTTGGCAACACCATAGGGCGAGCGGGGGTAGAAAGGCGTGGTCTCCTTCTGGGGAGTCTC 1903503
Query 159303 CTGAACCTTTCCAAACATTTCACTCGTCCCAGCCTGATAAAATTTGA-----ATTTAGAA 159357
||||| || | | || ||| ||||| || || || | ||
Sbjct 1903502 GACGACCTTACCGTAAAGCTCGGAGGTCGAGGCCTGGTAGAAGCGGACACGGTCCTGGAG 1903443
Query 159358 ACAAAATTGAATTGACGAATTGCTTCAAGAATTCGAAGGGTACCCATGGCGTCGACGTTC 159417
|| | || || || || || || || | || ||||| |||| || |||||||
Sbjct 1903442 ACCACAT----GTG-CGGATAGCGTCGAGCAGACGGAGGGTGCCCAGAGCATCGACGTCA 1903388
Query 159418 GCCGTGTACTCGGGCTGCTCAAAAGAGAGCTTCACGTGTGACTGGGCTCCGAGGTTATAG 159477
| |||||||||| | ||||| |||| ||| ||||||||||| || | | ||| |||
Sbjct 1903387 CCGGTGTACTCGGACATGTCAAAGGAGACCTTGACGTGTGACTGAGCAGCCAAGTTGTAG 1903328
Query 159478 ACCTC 159482
|||||
Sbjct 1903327 ACCTC 1903323
Score = 105 bits (116), Expect = 7e-18
Identities = 234/346 (68%), Gaps = 5/346 (1%)
Strand=Plus/Minus
Query 124507 TGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACT-GCTGCAACATAAGC 124565
|||| ||||||||||| | | || || || ||||| | | || |||| | ||| |||
Sbjct 1903851 TGTGGGTCTCACCCGTAGCCAGGACAAAGTCCTCGGGC-TGGTCTTGCTGGAGCATGAGC 1903793
Query 124566 CACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCG 124625
||||| | | ||||||||| || || ||||| || ||||||||||| | ||| ||
Sbjct 1903792 CACATACCCTCGACGTAGTCACGAGCATGACCCCAATCACGCTTGGCATCAATGTTACCA 1903733
Query 124626 AGCTCGATT--GGCTTGGCCGTCTTGTTCCAC-TCCGCCAAACCCAGTGTAATCTTGCGC 124682
|| | || | |||| | | | | | || || | | | | ||||||||
Sbjct 1903732 AGGTAGAGACAGTCTTGACGACCAAGATGGATATCAGCGACGGCGCGGGAGATCTTGCGG 1903673
Query 124683 GTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCA 124742
|| ||||| | || || || |||||||||||||| || || || | || ||
Sbjct 1903672 GTGACAAAGGTGCGGCCACGGCGGGGGGACTCGTGGTTGAAGAGGATACCGTTGCAGGCG 1903613
Query 124743 AACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGACACG 124802
|||| | || ||||| |||||||| || ||||| || || ||||||||| ||
Sbjct 1903612 TACATGTCATAGGACTCACGGTAGTTAACGGTGATCCAGTAACCGTAGAGCTTGGCAACA 1903553
Query 124803 CCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTAG 124848
|||||||| ||||||||||| || ||| | || || |||| ||
Sbjct 1903552 CCATAGGGCGAGCGGGGGTAGAAAGGCGTGGTCTCCTTCTGGGGAG 1903507
>seq49
Length=1681262
Score = 116 bits (128), Expect = 4e-21
Identities = 253/376 (67%), Gaps = 6/376 (2%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCG--TGTCCGTGAGACGT 53249
|||||||||||||| | || |||||||| ||| | | ||| | || ||||| |
Sbjct 830157 TCATGCGCGTCGCCCTCGGCATCCACGGCACAGACATTGATGCGGCTATC---GAGACAT 830101
Query 53250 ACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309
|| || ||| |||||| || || || ||||| || |||||||| |||||||||||||
Sbjct 830100 ACAGTTTCATGTCCCAAAAATATTTCACACACGCGACACCAACCCTCTTCAACGCTGGTA 830041
Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369
| || | |||||| | || ||||||| || || ||||| |||||| ||||| |
Sbjct 830040 CAAACCGTCCTCAGCTCTCCAGCTGCTATCTCGTCCAGATGAGAGATGACAGTATCGAGG 829981
Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429
||||||| || || | | || || | || ||||||| | ||||| | ||
Sbjct 829980 GCATCTATGATACCTTGACCACCTGCGCTCGTATTTCCAAGTCAGCCGGTGGCGTGGGCT 829921
Query 53430 TCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489
| || | || | || || ||| || || || || |||||| | |
Sbjct 829920 GCAGCTTCCAAAAGATTCGCGCTTCAGGCTCATATATTGCCGGCACCAACGGCACCTCGA 829861
Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549
| || ||||| || ||| | || |||| ||| |||| || || | ||||| ||| ||||
Sbjct 829860 ACGGCATCGTCCCCATGTTGCGTGTCTACAATGACACCGCGCGTTTCGTCACCCAAGGTG 829801
Query 53550 GTGGGAAGCGCAAGGG 53565
|||| ||||| || ||
Sbjct 829800 GTGGAAAGCGTAACGG 829785
Score = 104 bits (114), Expect = 3e-17
Identities = 148/203 (73%), Gaps = 4/203 (2%)
Strand=Plus/Minus
Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC-TGATTGACATGA 55784
|||||| || | ||| ||| |||||||| | | ||| | ||| | |||||||||
Sbjct 828303 TCTCAAAAAGCTGTACAAGACAGTGTGGGAACTGTCTCAGC-GTGTCATTATTGACATGG 828245
Query 55785 GTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATC 55844
|| || |||| ||| | |||||||||||||||||| |||| | ||| | | | |
Sbjct 828244 CCGCCGACCGTGCTGCTTTCATCGACCAGTCCCAGTCGTTGAATCTGTTCGTTGCCGAGC 828185
Query 55845 CTT-CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACG 55903
| | ||||| | | || ||||||||||||||| ||||||||||| |||||||||
Sbjct 828184 CAAACTATGGCCGACT-GACGTCGATGCACTTTTACTCTTGGAAGAAGGGTCTCAAGACG 828126
Query 55904 GGTATGTACTATCTGCGGACCCG 55926
|| ||||| || || || |||||
Sbjct 828125 GGCATGTATTACCTTCGAACCCG 828103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215664830200
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