Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq47 185 1e-41 seq34 134 2e-26 seq49 116 4e-21 >seq47 Length=1968370 Score = 185 bits (204), Expect = 1e-41 Identities = 345/507 (68%), Gaps = 0/507 (0%) Strand=Plus/Minus Query 53192 TTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTAC 53251 || ||||| || || ||||||| ||||| || || | | | | |||||| ||| Sbjct 706848 TTGATGCGTGTGGCTGTGGGTATTCACGGCGAGGATATCGAAGGCGCCATTGAGACTTAC 706789 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | ||| | || |||||||| ||||| | || |||||||||||||| ||||| Sbjct 706788 AACCTCATGTCTGAGAAATACTTTACCCACGCGAGTCCCACCCTGTTCAACGCCGGTACC 706729 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 || || ||| ||||| |||||| || || | |||||||| || ||||| || ||| Sbjct 706728 CCTCGTCCGCAGCTGTCGTCCTGCTTTTTGTTGACCATGAAGGAGGATTCGATTGAAGGC 706669 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 ||||| || || || || || |||| || |||||| ||||||| |||||| || Sbjct 706668 ATCTATGAAACTCTGAAAATTTGCTCCCAAATTTCCAAGACCGCGGGTGGCATCGGTCTC 706609 Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 || | | |||| || |||| | ||| || || || || || | Sbjct 706608 AACATCCACCAGATCCGGGCTTCCGGCTCGTACATCGCTGGTACCAATGGTTATTCCAAC 706549 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || |||||||||||||||||||| | ||| |||||||| || || ||| | || ||||| Sbjct 706548 GGCATCGTGCCTATGCTCCGCGTTTACAATAACACGGCTCGCTATGTCGATCAAGGTGGC 706489 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 |||||| ||| | |||||||||||||||||||| |||||| | || | | | Sbjct 706488 AACAAGCGCCCGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACCCGGATGTGTTCTCG 706429 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671 || || || || || ||| || | || |||| ||| ||||||||||| Sbjct 706428 TTCCTGGACCTCCGCAAGAACACCGGCAAGGAGGAGAATCGCGCGCGTGACCTGTTCTAT 706369 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATG 53698 || | ||||| || || || |||||| Sbjct 706368 GCCTTATGGATCCCTGATCTTTTCATG 706342 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834 ||||||||| ||||| || || || | || |||||| ||| ||| |||||||| Sbjct 705285 ATTGACATGGCAGCTGACCGCGGCGCCTTTATTGACCAGAGCCAAAGTCTAAACATCTTT 705226 Query 55835 AT-GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 || || ||| || | |||| || | || ||||||||||| || ||||||||||| Sbjct 705225 ATTGGCGAACCCAACTTTGGCAAACT-GACGAGTATGCACTTTTATGGCTGGAAGAAGGG 705167 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGACCCGC 55927 |||||||| || ||||||||||| || || ||| Sbjct 705166 TCTCAAGACAGGCATGTACTATCTCCGCACTCGC 705133 >seq34 Length=2752318 Score = 134 bits (148), Expect = 2e-26 Identities = 355/535 (66%), Gaps = 19/535 (4%) Strand=Plus/Minus Query 158959 TGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGG---ACCGGGCTGTTGGAGCATGAGC 159015 || ||||| || ||||||| |||||||||||| || | || |||| ||||||||| Sbjct 1210941 TGAGTCTCACCTGTCGCAAGCACAAAGTCCTCCGGTGAATCGTGCTGC---AGCATGAGC 1210885 Query 159016 CACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCG 159075 |||||| | || | || || | || || ||||| ||||||| || || ||||| || Sbjct 1210884 CACATGCCTTCAATATAGTCACGTGCATGGCCCCAATCGCGCTGCGCGTCAATGTTGCCA 1210825 Query 159076 AGCTCGATGA---CTTTTCCAGACTTTTTCCACTCAGCCAGACCGAGCGTGATCTTGCGC 159132 || | | | ||| || | | || |||| | | | ||||||||||| Sbjct 1210824 AGATACAGGCATTCTTGTCTCCCCAAATGAATATCGGCCACAGCCCGTGTGATCTTGCGG 1210765 Query 159133 GTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCG 159192 || |||||| ||| || || || |||||||| || | |||||| | || || Sbjct 1210764 GTTACAAACGTACGTCCACGGCGGGGGGATTCATGGTTGAATAAGATGCCGTTGCACGCA 1210705 Query 159193 AACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGGAGACG 159252 ||| ||| || ||||| ||||| ||| || ||||| || ||| | || |||| |||| Sbjct 1210704 TACATGTTGTAAGACTCCCGGTAGTTTACGGTGATCCAATAGCCATACAGTTTGGCGACG 1210645 Query 159253 CCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTGAATTGGTTCCTGAACCTTT 159312 || || || ||| |||||||| || ||| ||| ||||| | || |||||| Sbjct 1210644 CCATAAGGTGACCGTGGATAAAAAGGCGTCGTCTCCTTTTGCGGCGTCTCGACTACCTTT 1210585 Query 159313 CCAAACATTTCACTCGTCCCAGCCTGATAAAATTTGA----ATTTAGAAACAAAATTGAA 159368 ||| | | ||| || || || || || || || | || | Sbjct 1210584 CCATAGAGTTCTGAGGTAGATGCTTGGTAGAAACGGACGCGATCT---GTCAGTCCGCAG 1210528 Query 159369 TTGACGAATTGCTTCAAGAATTCGAAGGGTACCCATGGCGTCGACGTTCGCC-GTGTACT 159427 || || || || || | | |||||| ||||||| ||||||||| ||||| ||||||| Sbjct 1210527 GTG-CGGATCGCGTCCAACAGTCGAAGTGTACCCAGAGCGTCGACG-TCGCCGGTGTACT 1210470 Query 159428 CGGGCTGCTCAAAAGAGAGCTTCACGTGTGACTGGGCTCCGAGGTTATAGACCTC 159482 ||| | ||||| || | ||| ||||| ||||| ||| | | ||| |||||||| Sbjct 1210469 CGGACATGTCAAATGACACCTTGACGTGAGACTGAGCTGCCAAGTTGTAGACCTC 1210415 Score = 134 bits (148), Expect = 2e-26 Identities = 363/545 (67%), Gaps = 19/545 (3%) Strand=Plus/Minus Query 158949 GCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCT-GTTGGA 159007 ||||| |||| ||||| || || || | ||||||||||| || | || || | |||| Sbjct 1903859 GCGGACAGTGTGGGTCTCACCCGTAGCCAGGACAAAGTCCTCGGG-CTGGTCTTGCTGGA 1903801 Query 159008 GCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCA 159067 ||||||||||||| |||||||||| || | || |||||||| || ||||||||||| | Sbjct 1903800 GCATGAGCCACATACCCTCGACGTAGTCACGAGCATGACCCCAATCACGCTTGGCATCAA 1903741 Query 159068 TGTTCCCGAGCTCGATGAC--TTTTCCAGAC--TTTTTCCACTCAGCCAGACCGAGCGTG 159123 |||| || || | || ||| | || ||| | ||||| | || | | | Sbjct 1903740 TGTTACCAAGGTAGA-GACAGTCTTGACGACCAAGATGGATATCAGCGACGGCGCGGGAG 1903682 Query 159124 ATCTTGCGCGTCACAAACTCTGC-TCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCC 159182 |||||||| || ||||| ||| || || || ||||| ||||| || || || || Sbjct 1903681 ATCTTGCGGGTGACAAA-GGTGCGGCCACGGCGGGGGGACTCGTGGTTGAAGAGGATACC 1903623 Query 159183 GGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAG 159242 | | || ||| ||| || ||||||||| ||||| || || |||||||| || |||| Sbjct 1903622 GTTGCAGGCGTACATGTCATAGGACTCACGGTAGTTAACGGTGATCCAGTAACCGTAGAG 1903563 Query 159243 CTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTGAATTGGTTC 159302 ||||| || || || || || || || || || || ||| || || | || Sbjct 1903562 CTTGGCAACACCATAGGGCGAGCGGGGGTAGAAAGGCGTGGTCTCCTTCTGGGGAGTCTC 1903503 Query 159303 CTGAACCTTTCCAAACATTTCACTCGTCCCAGCCTGATAAAATTTGA-----ATTTAGAA 159357 ||||| || | | || ||| ||||| || || || | || Sbjct 1903502 GACGACCTTACCGTAAAGCTCGGAGGTCGAGGCCTGGTAGAAGCGGACACGGTCCTGGAG 1903443 Query 159358 ACAAAATTGAATTGACGAATTGCTTCAAGAATTCGAAGGGTACCCATGGCGTCGACGTTC 159417 || | || || || || || || || | || ||||| |||| || ||||||| Sbjct 1903442 ACCACAT----GTG-CGGATAGCGTCGAGCAGACGGAGGGTGCCCAGAGCATCGACGTCA 1903388 Query 159418 GCCGTGTACTCGGGCTGCTCAAAAGAGAGCTTCACGTGTGACTGGGCTCCGAGGTTATAG 159477 | |||||||||| | ||||| |||| ||| ||||||||||| || | | ||| ||| Sbjct 1903387 CCGGTGTACTCGGACATGTCAAAGGAGACCTTGACGTGTGACTGAGCAGCCAAGTTGTAG 1903328 Query 159478 ACCTC 159482 ||||| Sbjct 1903327 ACCTC 1903323 Score = 105 bits (116), Expect = 7e-18 Identities = 234/346 (68%), Gaps = 5/346 (1%) Strand=Plus/Minus Query 124507 TGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACT-GCTGCAACATAAGC 124565 |||| ||||||||||| | | || || || ||||| | | || |||| | ||| ||| Sbjct 1903851 TGTGGGTCTCACCCGTAGCCAGGACAAAGTCCTCGGGC-TGGTCTTGCTGGAGCATGAGC 1903793 Query 124566 CACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCG 124625 ||||| | | ||||||||| || || ||||| || ||||||||||| | ||| || Sbjct 1903792 CACATACCCTCGACGTAGTCACGAGCATGACCCCAATCACGCTTGGCATCAATGTTACCA 1903733 Query 124626 AGCTCGATT--GGCTTGGCCGTCTTGTTCCAC-TCCGCCAAACCCAGTGTAATCTTGCGC 124682 || | || | |||| | | | | | || || | | | | |||||||| Sbjct 1903732 AGGTAGAGACAGTCTTGACGACCAAGATGGATATCAGCGACGGCGCGGGAGATCTTGCGG 1903673 Query 124683 GTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCA 124742 || ||||| | || || || |||||||||||||| || || || | || || Sbjct 1903672 GTGACAAAGGTGCGGCCACGGCGGGGGGACTCGTGGTTGAAGAGGATACCGTTGCAGGCG 1903613 Query 124743 AACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGACACG 124802 |||| | || ||||| |||||||| || ||||| || || ||||||||| || Sbjct 1903612 TACATGTCATAGGACTCACGGTAGTTAACGGTGATCCAGTAACCGTAGAGCTTGGCAACA 1903553 Query 124803 CCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTAG 124848 |||||||| ||||||||||| || ||| | || || |||| || Sbjct 1903552 CCATAGGGCGAGCGGGGGTAGAAAGGCGTGGTCTCCTTCTGGGGAG 1903507 >seq49 Length=1681262 Score = 116 bits (128), Expect = 4e-21 Identities = 253/376 (67%), Gaps = 6/376 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCG--TGTCCGTGAGACGT 53249 |||||||||||||| | || |||||||| ||| | | ||| | || ||||| | Sbjct 830157 TCATGCGCGTCGCCCTCGGCATCCACGGCACAGACATTGATGCGGCTATC---GAGACAT 830101 Query 53250 ACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || || ||| |||||| || || || ||||| || |||||||| ||||||||||||| Sbjct 830100 ACAGTTTCATGTCCCAAAAATATTTCACACACGCGACACCAACCCTCTTCAACGCTGGTA 830041 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | || | |||||| | || ||||||| || || ||||| |||||| ||||| | Sbjct 830040 CAAACCGTCCTCAGCTCTCCAGCTGCTATCTCGTCCAGATGAGAGATGACAGTATCGAGG 829981 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 ||||||| || || | | || || | || ||||||| | ||||| | || Sbjct 829980 GCATCTATGATACCTTGACCACCTGCGCTCGTATTTCCAAGTCAGCCGGTGGCGTGGGCT 829921 Query 53430 TCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 | || | || | || || ||| || || || || |||||| | | Sbjct 829920 GCAGCTTCCAAAAGATTCGCGCTTCAGGCTCATATATTGCCGGCACCAACGGCACCTCGA 829861 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | || ||||| || ||| | || |||| ||| |||| || || | ||||| ||| |||| Sbjct 829860 ACGGCATCGTCCCCATGTTGCGTGTCTACAATGACACCGCGCGTTTCGTCACCCAAGGTG 829801 Query 53550 GTGGGAAGCGCAAGGG 53565 |||| ||||| || || Sbjct 829800 GTGGAAAGCGTAACGG 829785 Score = 104 bits (114), Expect = 3e-17 Identities = 148/203 (73%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC-TGATTGACATGA 55784 |||||| || | ||| ||| |||||||| | | ||| | ||| | ||||||||| Sbjct 828303 TCTCAAAAAGCTGTACAAGACAGTGTGGGAACTGTCTCAGC-GTGTCATTATTGACATGG 828245 Query 55785 GTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATC 55844 || || |||| ||| | |||||||||||||||||| |||| | ||| | | | | Sbjct 828244 CCGCCGACCGTGCTGCTTTCATCGACCAGTCCCAGTCGTTGAATCTGTTCGTTGCCGAGC 828185 Query 55845 CTT-CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACG 55903 | | ||||| | | || ||||||||||||||| ||||||||||| ||||||||| Sbjct 828184 CAAACTATGGCCGACT-GACGTCGATGCACTTTTACTCTTGGAAGAAGGGTCTCAAGACG 828126 Query 55904 GGTATGTACTATCTGCGGACCCG 55926 || ||||| || || || ||||| Sbjct 828125 GGCATGTATTACCTTCGAACCCG 828103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215664830200