Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1 141 8e-29 >seq1 Length=4845341 Score = 141 bits (156), Expect = 8e-29 Identities = 421/646 (65%), Gaps = 20/646 (3%) Strand=Plus/Minus Query 29834 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCC 29893 || ||||||||||||| || || | | ||||| ||| |||| || | | ||| Sbjct 663116 AGAGTGGGAAAGGGTCGCGGTTCGCGTTGCAGCTGTTGCTTGAGCGCATCGATATGATCG 663057 Query 29894 AGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29953 | |||| ||| | ||| |||| | | ||||||||||| ||||| || || | ||||| Sbjct 663056 ACATAGATGTGGGTGTCGCCCATGGTATGGACAAACTCGCCCGGCTCGAGGTCAGTGACA 662997 Query 29954 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013 ||||| |||||| | || || || | || || ||||| ||||| || ||||| ||| Sbjct 662996 TGAGCGATCATGCATGTCAGCAGCGCATACGATGCAATGTTGAAGGGCACACCGAGGCCC 662937 Query 30014 ATGTCCCCCGACCTCTGGTAGA----GC-TGACA----CGAGAGCTCTCCGTCGC----- 30059 ||||| | ||| | |||||| | || |||| || |||| || |||| Sbjct 662936 ATGTCGCACGAGCGCTGGTATAAAACGCAAGACAGGCGCGCACGCTCACCCTCGCGAGGG 662877 Query 30060 ----TCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 || ||||| ||||| | ||| || || || || |||||||||| | | || Sbjct 662876 GTTGAGACATAAAATTGACAAAAGGCATGACAAGGTGGCAGAGCCATGATGGGGATATCG 662817 Query 30116 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 30175 |||||||| ||| | | |||||||| | ||| |||||||| || ||| || Sbjct 662816 GCTGGGTTCCATGCGGATAGAATGATGCGACGGTCAGTAGGGTTGTTTCTAATGGTATCA 662757 Query 30176 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG-CCCTCATGTCCGTGTA 30234 | | | || || || || || || || | || || | | || |||| |||| Sbjct 662756 ATGATCTGCTGGAGTTGGTCGACGCCTTGTCCTGTATAATCCGTATCGCA-GTCCTTGTA 662698 Query 30235 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30294 |||||||| || || | ||||||||| ||||| || || || || || || |||| | Sbjct 662697 TTCTGCTCCAAAGTGGCGCCACTGGAATCCGTAGACGGGGCCGAGATCGCCTTCTTTGCG 662638 Query 30295 GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 30354 ||| | || | ||| | ||| || | ||||||||| | ||||| ||||| | Sbjct 662637 GTGGGACAGTCCACGAGAGTCGAGAAACTCACGTGAACCGTTGCCATCCCAAATCTTGAT 662578 Query 30355 CCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30414 ||| ||| || | | | ||| || || ||| |||||| || ||||| || Sbjct 662577 GCCCCGCTCGCTCAGGTGATGGCTGTTCGTATCGCCCTTGATGAACCAAAGGAGCTCTTC 662518 Query 30415 CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30460 || ||| | ||||||| | || || || || | |||||| Sbjct 662517 CAGTACGCCACGGAAAAAGACTCGTTTTGTGGTCAGCAATGGAAAC 662472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310157356508