Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq23 107 1e-18 seq47 98.7 6e-16 >seq23 Length=2864373 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| ||||| |||||| || ||||| || || || || || || | |||||| Sbjct 1572008 ACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCA 1571949 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || || || || | |||||| |||||||| || | |||||||||||| | Sbjct 1571948 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGG 1571889 Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 ||||| || || | | || | ||| ||| ||||| | ||| || || || Sbjct 1571888 ATCTTCTGCTTCACATTTTCGATAGAGTCAGATGACTCAACTTCGAGGGTGATGGTCTTG 1571829 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || ||||||||||| Sbjct 1571828 CCGGTCAAGGTCTTGACGAAAATCTGCAT 1571800 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | |||||| || ||||||||| ||||| || || ||| Sbjct 1572482 CCGCCACGAAGACGGAGGACAAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAA 1572423 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| ||||| || || || ||||| || | ||||| |||||||| || Sbjct 1572422 AGCGTACGACCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGG 1572363 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||| || || ||| | ||| | ||| ||| || Sbjct 1572362 ATGCCCTCCTTGTCCTGAATCTTCTG-CTTGACGTTCTCAATGGAGTCAGACGACTCAAC 1572304 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || || || || ||||| |||||||| Sbjct 1572303 CTCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 1572256 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | |||||| ||| |||||| || || || || || ||||| || || Sbjct 1572245 AGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGG 1572186 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || | |||||| |||||||| || | |||||| Sbjct 1572185 CCATCCTCGAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGAATACCCTCC 1572126 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 |||||| |||||| || || | | ||| | ||| ||| || || | || Sbjct 1572125 TTGTCTTGGATCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCAACCTCAAGTGTA 1572066 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | ||| || || ||||||||||| Sbjct 1572065 ATGGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 1572028 Score = 96.9 bits (106), Expect = 2e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | |||||||||| |||||| || ||||| ||||| || || || || Sbjct 1571561 AGACGGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGG 1571502 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || || ||||| || | ||||| || ||||| || | |||||| Sbjct 1571501 CCATCTTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGGAATGCCCTCC 1571442 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||||| || || ||| | || | ||| ||| ||||| | || Sbjct 1571441 TTGTCTTGAATCTTCTG-CTTGACGTTCTCGATAGAGTCGGAAGACTCGACTTCAAGAGT 1571383 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || ||||| | || || || |||||||||||||| Sbjct 1571382 GATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGTT 1571341 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || ||| |||||||||||||| ||||| || || || || | || || Sbjct 1571780 ACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGGCCATCCTCG 1571721 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || ||||| || | ||||| |||||||| || | |||||||||||| | Sbjct 1571720 AGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGG 1571661 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||||| || || ||| | ||| | ||| ||| || || | ||| || || || Sbjct 1571660 ATCTTCTG-CTTGACGTTCTCAATCGAGTCGGACGACTCAACCTCGAGGGTGATAGTCTT 1571602 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || ||||| || ||||| Sbjct 1571601 GCCAGTCAAGGTCTTGACAAAGATTTGCAT 1571572 >seq47 Length=1968370 Score = 98.7 bits (108), Expect = 6e-16 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 34479 GCCGCCTC-TAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||||| | |||| |||| ||||||||| || || |||||||||||||| || || | Sbjct 80837 GCCGCCGCGTAAG-CGCAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCG 80895 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || || |||| || || || || || ||||| || | |||||| || || || | Sbjct 80896 AGAGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGAG 80955 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTC 34655 | | || ||||||||| ||| || | || || | |||||||| || | || Sbjct 80956 GAATGCCTTCCTTGTCT-TGAATCTTGGCCTTGACATTGTCGATTGTGTCAGACGAT-TC 81013 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| || || || || ||||| | || |||||||| |||||||| Sbjct 81014 AACTTCCAACGTAATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 81064 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||| |||||||| || ||| |||||||||||| || || || || Sbjct 80610 CCGCCACGCAGACGCAGGACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGAC 80669 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || |||| || || || || || ||||| || | |||||||||||| ||||| Sbjct 80670 AAAGTCCGTCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGA 80729 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || || || || |||| || | ||| || || || || || || || Sbjct 80730 ATGCCTTCTTTATCCTGGATC-TTGGCTTTCACATTATCGATCGTATCAGATGATTCGAC 80788 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||||| || || || || || || || |||||||| |||||| Sbjct 80789 CTCTAATGTTATAGTCTTGCCTGTCAAGGTCTTGACAAAAATTTGCATG 80837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729412047417