Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq47 163 2e-35 seq23 156 4e-33 >seq47 Length=1968370 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||||||||||||| ||||||| | ||||| ||| |||| Sbjct 81064 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACTATTACGTTGGAAGTTGAATCGTCT 81005 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||||||||| |||||||| || || ||||| Sbjct 81004 GACACAATCGACAATGTCAAGGCCAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAG 80945 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || | || ||| || || | || || |||||| Sbjct 80944 CAGCGTCTGATCTTTGCGGGCAAGCAGCTCGAGGACGGTCGCACTCTCTCGGACTACAAC 80885 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| ||||| | |||||||| |||| || || || ||||| Sbjct 80884 ATTCAAAAGGAATCGACGCTGCATTTGGTGCTGCGCTTACGCGGCGGCAT 80835 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || ||||| ||| |||| || |||||||| || | || Sbjct 81293 CATGCAGATCTTCGTCAAGACACTTACCGGAAAGACTATAACCCTTGAAGTCGAGTCCTC 81234 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| || ||||| ||||| |||||||| || || || || Sbjct 81233 TGACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCA 81174 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||||||||| | || ||| || ||| | || |||||||| Sbjct 81173 GCAGCGTCTGATCTTTGCCGGCAAACAACTCGAGGACGGTCGCACCCTCTCGGATTACAA 81114 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||| |||||| | ||| | || | ||| | || ||||| || Sbjct 81113 CATTCAGAAGGAATCGACCCTCCATCTCGTGCTTCGTCTCCGTGGTGGTAT 81063 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || |||||| || ||||| || || |||| |||||| |||| || | || || ||| | Sbjct 80840 CGGCATGCAAATTTTTGTCAAGACCTTGACAGGCAAGACTATAACATTAGAGGTCGAATC 80781 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || || |||| || | || ||| || || || || ||||||||||| || || || Sbjct 80780 ATCTGATACGATCGATAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCGCCTGA 80721 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||||||||| | || | || ||||| || | || ||| | ||| | || || || Sbjct 80720 CCAACAGCGTCTTATCTTTGCGGGCAAGCAGCTCGAGGACGGACGGACTTTGTCGGACTA 80661 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| |||||||||||||| || | |||||||| ||||| |||| || || Sbjct 80660 CAATATTCAAAAGGAGTCCACGCTGCATTTGGTCCTGCGTCTGCGTGGCGG 80610 >seq23 Length=2864373 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || ||||||||| | || ||||||||||| || | || Sbjct 1571343 CATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAAGTCGAGTCTTC 1571402 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||| || |||| ||||| || || ||||||||||| || ||||| || || ||||| Sbjct 1571403 CGACTCTATCGAGAACGTCAAGCAGAAGATTCAAGACAAGGAGGGCATTCCTCCGGATCA 1571462 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || ||||| || |||||||| | ||| | ||||||||||| Sbjct 1571463 GCAGCGCCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTCTCCGATTACAA 1571522 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | ||| | || | ||| | || ||||| || Sbjct 1571523 CATCCAGAAGGAGTCCACTCTCCATCTTGTGCTCCGTCTCCGTGGTGGTAT 1571573 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| |||||| |||| || || || || || ||||| Sbjct 1571572 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTCGAGGTTGAGTCGTCC 1571631 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||||| ||||| || || || |||||||| || ||||| || || || || Sbjct 1571632 GACTCGATTGAGAACGTCAAGCAGAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAG 1571691 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| || | || || | || | || ||||||||| Sbjct 1571692 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCTGATTACAAC 1571751 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || ||| | || |||||| | || |||| ||||| || Sbjct 1571752 ATTCAAAAGGAATCCACCCTTCACTTGGTTCTCCGCCTGCGTGGTGGTAT 1571801 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| |||| || || || || || |||| Sbjct 1572256 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTCGAGGTTGAGTCGTCT 1572315 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||||| ||||| || || ||||| ||||| || ||||| || || || || Sbjct 1572316 GACTCCATTGAGAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 1572375 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| || | || ||| || || |||| || |||||| Sbjct 1572376 CAGCGCCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGTACGCTTTCGGACTACAAC 1572435 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||||||| | ||| | || | ||| | || || || Sbjct 1572436 ATCCAAAAGGAGTCGACCCTCCATCTTGTCCTCCGTCTTCGTGGCGG 1572482 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | ||||| ||||| || || | || Sbjct 1572028 ATGCAGATTTTCGTCAAGACGCTGACCGGCAAGACCATTACACTTGAGGTTGAGTCATCT 1572087 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||| | || || || || || |||||||| || || || || || || || Sbjct 1572088 GACTCGATTGAAAATGTGAAGCAGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAG 1572147 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || | || || | ||| ||||||| ||||| Sbjct 1572148 CAGCGTCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAAT 1572207 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | ||| | || | ||| | || ||||| || Sbjct 1572208 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTCCGTGGTGGTAT 1572257 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||||||| | || || || ||||| || | || Sbjct 1571800 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAAGTTGAGTCATCT 1571859 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || || | || || || || || |||||||| || || || || || || || Sbjct 1571860 GACTCTATCGAAAATGTGAAGCAGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAG 1571919 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | ||||| | || | || || |||||| Sbjct 1571920 CAGCGTCTCATTTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAAC 1571979 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||||||||| | || |||| ||||| || Sbjct 1571980 ATCCAGAAGGAGTCTACTCTGCATTTGGTTCTCCGCCTGCGTGGTGGTAT 1572029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918133612480