Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 156 4e-33 >seq1 Length=4845341 Score = 156 bits (172), Expect = 4e-33 Identities = 469/723 (65%), Gaps = 26/723 (4%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 ||||| ||||||| || ||||| || | | ||||| | || ||||| || ||| Sbjct 662473 TTTCCATTGCTGACCACAAAACGAGTCTTTTTCCGTGGCGTACTGGAAGAGCTCCTTTGG 662532 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 ||| | | ||| | ||||||| | | | || ||||| | ||||| ||||| Sbjct 662533 TTCATCAAGGGCGATACGAACAGCCATCACCTGAGCGAGCGGGGCATCAAGATTTGGGAT 662592 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTT--CCCATCTCGGGAGGAGGGCG 34397 | |||| || || || ||||| ||| || || | |||| | | | || |||| Sbjct 662593 GGCAACGGTTCACGTGAGTTTCTCGACTCTCGTGGACTGTCCCACCGCA--AAGAAGGCG 662650 Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457 | | ||||| |||||||| ||||||||| | |||||||| || || || || ||| Sbjct 662651 ATCTCGGCCCCGTCTACGGATTCCAGTGGCGCCACTTTGGAGCAGAATACAAGGACTGCG 662710 Query 34458 AAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT--GAA 34515 | |||| ||| | ||||| || | ||||| || ||| | | || || ||| | ||| Sbjct 662711 ATACGGATTATACAGGACAAGGCGTCGACCAACTCCAGCAGATCATTGATACCATTAGAA 662770 Query 34516 GCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCT 34575 | |||||| |||| | | ||| | | | ||| |||||||| ||| |||| | Sbjct 662771 AC--AACCCTACTGACCGTCGCATCATTCTATCCGCATGGAACCCAGCCGATATCCCCAT 662828 Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGA---------ATGG 34626 ||||| || || || || || || | || ||||| || ||| | | | || Sbjct 662829 CATGGCTCTGCCACCTTGTCATGCCTTTTGTCAATTTTATGTCTCAACCCCTCGCGAGGG 662888 Query 34627 GGAGC---------TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGT 34677 |||| |||| ||| | || || || ||| | |||||||| | || || Sbjct 662889 TGAGCGTGCGCGCCTGTCTTGCGTTTTATACCAGCGCTCGTGCGACATGGGCCTCGGTGT 662948 Query 34678 GCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTT 34737 ||| ||||||||||| || || ||||| || | |||||||||||||||| | | Sbjct 662949 GCCCTTCAACATTGCATCGTATGCGCTGCTGACATGCATGATCGCTCATGTCACTGACCT 663008 Query 34738 GGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGA 34797 | || || ||| | || ||||| |||| || | || ||||| | | || ||||| Sbjct 663009 CGAGCCGGGCGAGTTTGTCCATACCATGGGCGACACCCACATCTATGTCGATCATATCGA 663068 Query 34798 GCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCG 34857 |||| | ||||||||||| || || ||||| || ||| ||| ||| || Sbjct 663069 TGCGCTCAAGCAACAGCTGCAACGCGAACCGCGACCCTTTCCCACTCTCCGCTTTAAGCG 663128 Query 34858 AGCCGTCACCTCAATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTACCGGCC 34917 ||| ||| || || ||||| | | ||| |||||| | | ||| |||| ||| Sbjct 663129 CAAGATCAGCTCCATAGACGACTTCACCACCGATGACTTCATCCTCGAAAACTACCAGCC 663188 Query 34918 GCA 34920 ||| Sbjct 663189 GCA 663191 Score = 156 bits (172), Expect = 4e-33 Identities = 469/723 (65%), Gaps = 26/723 (4%) Strand=Plus/Minus Query 6425 TGCGGCCGGTACCCTTCCAACACGAAGTCCTCGCTCCTAAAGTCATCGATTGAGGTGACG 6484 |||||| |||| ||| | | |||||| ||| | | ||||| || || ||| ||| Sbjct 663191 TGCGGCTGGTAGTTTTCGAGGATGAAGTCATCGGTGGTGAAGTCGTCTATGGAGCTGATC 663132 Query 6485 GCTCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGC 6544 || ||| ||| ||| || ||||| || || ||||||||||| | |||| Sbjct 663131 TTGCGCTTAAAGCGGAGAGTGGGAAAGGGTCGCGGTTCGCGTTGCAGCTGTTGCTTGAGC 663072 Query 6545 CGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGA 6604 ||||| || | | ||||| || | || |||| ||||| || | ||| || || Sbjct 663071 GCATCGATATGATCGACATAGATGTGGGTGTCGCCCATGGTATGGACAAACTCGCCCGGC 663012 Query 6605 ACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAAC 6664 | | | |||||||||||||||| | || ||||| || || ||||||||||| Sbjct 663011 TCGAGGTCAGTGACATGAGCGATCATGCATGTCAGCAGCGCATACGATGCAATGTTGAAG 662952 Query 6665 GGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACA---------GC 6715 ||||| || | |||||||| | ||| || || || | ||| |||| || Sbjct 662951 GGCACACCGAGGCCCATGTCGCACGAGCGCTGGTATAAAACGCAAGACAGGCGCGCACGC 662892 Query 6716 TCCCCAT---------TCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCC 6766 || || | | | ||| || ||||| || | || || || || || || ||| Sbjct 662891 TCACCCTCGCGAGGGGTTGAGACATAAAATTGACAAAAGGCATGACAAGGTGGCAGAGCC 662832 Query 6767 ATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTC 6826 || | |||| ||| |||||||| ||| | | | ||| | | |||| |||||| Sbjct 662831 ATGATGGGGATATCGGCTGGGTTCCATGCGGATAGAATGATGCGACGGTCAGTAGGGTT- 662773 Query 6827 CGCTTC--AAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG 6884 | ||| | ||| || || | | ||| || ||||| | || ||||| | ||| |||| Sbjct 662772 -GTTTCTAATGGTATCAATGATCTGCTGGAGTTGGTCGACGCCTTGTCCTGTATAATCCG 662714 Query 6885 CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCA 6944 |||| || || || || |||||||| | ||||||||| |||||||| ||||| | Sbjct 662713 TATCGCAGTCCTTGTATTCTGCTCCAAAGTGGCGCCACTGGAATCCGTAGACGGGGCCGA 662654 Query 6945 AGTCGCCCTCCTCCCGAGATGGG--AACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTG 7002 ||||| || | | | |||| | || || ||| ||||| || || || |||| Sbjct 662653 GATCGCCTTCTT--TGCGGTGGGACAGTCCACGAGAGTCGAGAAACTCACGTGAACCGTT 662596 Query 7003 AGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCAC 7062 | ||||| ||||| | ||||| || | | | ||||||| | ||| | | Sbjct 662595 GCCATCCCAAATCTTGATGCCCCGCTCGCTCAGGTGATGGCTGTTCGTATCGCCCTTGAT 662536 Query 7063 GAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 |||||| || ||||| || | ||||| | | || ||||| || ||||||| || Sbjct 662535 GAACCAAAGGAGCTCTTCCAGTACGCCACGGAAAAAGACTCGTTTTGTGGTCAGCAATGG 662476 Query 7123 AAA 7125 ||| Sbjct 662475 AAA 662473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262125439280