Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq47 87.8 1e-12 >seq47 Length=1968370 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||||||||| || || | || || || ||| ||| | || |||||| | | Sbjct 80836 ATGCAAATTTTTGTCAAGACCTTGACAGGCAAGACTATAACATTAGAGGTCGAATCATCT 80777 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||||| | ||| || ||| || || || |||||||| ||||| || | Sbjct 80776 GATACGATCGATAAT--GTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCGCCTGACC 80719 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || ||||| || || || | || |||| ||| | ||||| || |||| Sbjct 80718 AACAGCGTCTTATCTTTGCGGGCAAGCAGCTCGAGGACGGACGGACTTTGTCGGACTACA 80659 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || ||||| ||| ||| |||||||||| ||||| |||||||||| Sbjct 80658 ATATTCAAAAGGAGTCCACGCTGCATTTGGTCCTGCGTCTGCGTGGCGG 80610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862187483423