Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq23 179 9e-40 seq47 149 1e-30 seq48 93.3 1e-13 seq46 89.7 1e-12 >seq23 Length=2864373 Score = 179 bits (198), Expect = 9e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | |||||||| || || || ||||| ||||||||||| || |||| ||| || Sbjct 1572477 ACGAAGACGGAGGACAAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGCGT 1572418 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| || ||||| ||||| || ||||| ||||| | || Sbjct 1572417 ACGACCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCC 1572358 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || || ||||| || |||| |||||| ||||||||||| Sbjct 1572357 CTCCTTGTCCTGAATCTTCTGCTTGACGTTCTCAATGGAGTCAGACGACTCAACCTCGAG 1572298 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | ||||| ||||| | |||||| Sbjct 1572297 GGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 1572256 Score = 172 bits (190), Expect = 1e-37 Identities = 171/220 (78%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || ||||||||||| || |||||||| ||||| | ||||| | |||||| Sbjct 1571555 AGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCT 1571496 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| || ||||| ||||| || || || ||||||| || |||||||| Sbjct 1571495 TCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCT 1571436 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || ||||| ||||| | ||| || || || || |||||||| ||| Sbjct 1571435 TGAATCTTCTGCTTGACGTTCTCGATAGAGTCGGAAGACTCGACTTCAAGAGTGATGGTC 1571376 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGT 211122 || || ||||| ||||| || || | |||||| || |||| Sbjct 1571375 TTGCCGGTGAGGGTCTTGACGAAAATCTGCATGTT-TGGT 1571337 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || ||||| || || || | |||||| | ||||| Sbjct 1572239 AGCACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGGCCATCC 1572180 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || |||||||| || || ||||| ||||||| || |||||||| Sbjct 1572179 TCGAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCT 1572120 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| || | |||||| |||||||| || || || ||| Sbjct 1572119 TGGATCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCAACCTCAAGTGTAATGGTC 1572060 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 1572059 TTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 1572028 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || ||||| ||||| || |||||||| || || | || || | |||||||| |||||| Sbjct 1572002 TGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGC 1571943 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| ||||| || || || || ||||| ||||||| || |||||||| |||||||| Sbjct 1571942 TTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTC 1571883 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || ||||| |||||||| | |||||| ||||| ||||| ||||| ||||| || || Sbjct 1571882 TGCTTCACATTTTCGATAGAGTCAGATGACTCAACTTCGAGGGTGATGGTCTTGCCGGTC 1571823 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | |||||| Sbjct 1571822 AAGGTCTTGACGAAAATCTGCAT 1571800 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| ||||| || ||||| ||||| ||||| | || || | ||||| Sbjct 1571783 AGAACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGGCCATCC 1571724 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| || ||||| ||||| | || |||||||| Sbjct 1571723 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCT 1571664 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||| || || | ||| || ||||||||||| ||||| ||| Sbjct 1571663 TGGATCTTCTGCTTGACGTTCTCAATCGAGTCGGACGACTCAACCTCGAGGGTGATAGTC 1571604 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | ||||| Sbjct 1571603 TTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1571572 >seq47 Length=1968370 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || |||||||| ||||| || || || |||| | |||| ||| || Sbjct 80625 AGGACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGACAAAGTCCGTCCGTCC 80684 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || |||||||| || ||||||||||| |||| ||||| || ||| Sbjct 80685 TCGAGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGAATGCCTTCTTTATCC 80744 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || ||||| || ||||| ||| ||||| | || || ||| Sbjct 80745 TGGATCTTGGCTTTCACATTATCGATCGTATCAGATGATTCGACCTCTAATGTTATAGTC 80804 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | ||||| Sbjct 80805 TTGCCTGTCAAGGTCTTGACAAAAATTTGCAT 80836 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || || || ||||| ||||| || |||| || || | || || || |||||| Sbjct 80862 TGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGAGAGAGTGCGACCGTCCTCGAGCTGC 80921 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| || || || || || ||||||| ||||||||||| || ||||| Sbjct 80922 TTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTG 80981 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || ||||| |||||||| |||||| || | || || ||||| || || Sbjct 80982 GCCTTGACATTGTCGATTGTGTCAGACGATTCAACTTCCAACGTAATAGTCTTGCCGGTC 81041 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| | |||||| Sbjct 81042 AGAGTCTTCACAAAGATCTGCAT 81064 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || || || || || ||||| ||||||| ||||| | || || Sbjct 81081 AGCACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGACCGTCC 81140 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || ||||| || ||||| || || || |||||||| || | |||||||||||| Sbjct 81141 TCGAGTTGTTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 81200 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || || |||||||||||| || || || || || || ||| Sbjct 81201 TGAATCTTGGACTTGACATTGTCAATGGTGTCAGAGGACTCGACTTCAAGGGTTATAGTC 81260 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| || || | |||||| Sbjct 81261 TTTCCGGTAAGTGTCTTGACGAAGATCTGCAT 81292 >seq48 Length=1814144 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || ||||| || || ||||| || |||| |||||| | || || Sbjct 1641590 AGCACAAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 1641531 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 || ||||||||||| ||||| || || || || ||||| || |||| ||||| || Sbjct 1641530 TCGAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCTTCATT 1641475 >seq46 Length=2048726 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||| ||||| || |||||||| || || | ||| || | ||||| Sbjct 962353 AGCACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 962412 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 || ||||||||||| ||||| || || || || || || || |||| |||| Sbjct 962413 TCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGAATACCTT 962464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151272269885