Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq23 107 2e-18 seq47 102 7e-17 >seq23 Length=2864373 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| || ||||| || || ||||| | || || || | || || Sbjct 1571780 ACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGGCCATCCTCG 1571721 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || || ||||||||||| | || | || ||| ||||| | Sbjct 1571720 AGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGG 1571661 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || ||||| |||| || | | || ||| |||||| || || | |||||| | || Sbjct 1571660 ATCTTCTGCTTGACGTTCTCAATCGAGTCGGACGACTCAACCTCGAGGGTGATAGTCTTG 1571601 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || |||||||||||||| Sbjct 1571600 CCAGTCAAGGTCTTGACAAAGATTTGCAT 1571572 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| || || || || | ||| || || |||| |||||||| ||||| ||||| Sbjct 1572447 CTCCTTTTGGATGTTGTAGTCCGAAAGCGTACGACCGTCCTCAAGCTGCTTGCCAGCAAA 1572388 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | || | || ||| |||||| || ||||| |||| | Sbjct 1572387 GATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTT 1572328 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | | || |||||| || || | |||||| | || || |||| || || || Sbjct 1572327 CTCAATGGAGTCAGACGACTCAACCTCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGAC 1572268 Query 39273 AAAGATTTGCAT 39284 |||||| ||||| Sbjct 1572267 AAAGATCTGCAT 1572256 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || ||| ||| || || ||||| || |||| ||| || || | || || Sbjct 1572237 CACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGGCCATCCTC 1572178 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| ||||||||||||||||| | || | | ||| ||||| Sbjct 1572177 GAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTG 1572118 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| ||||| || | | | | || || ||||| || || | || || | || Sbjct 1572117 GATCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCAACCTCAAGTGTAATGGTCTT 1572058 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||||||| || || || || ||||| Sbjct 1572057 GCCGGTCAGCGTCTTGACGAAAATCTGCAT 1572028 >seq47 Length=1968370 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| |||||| ||| ||||| ||||| || || | | || ||| |||| || Sbjct 80628 ACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGACAAAGTCCGTCCGTCCTCG 80687 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||||||||| ||||||||||| ||||| | || | || ||||| ||| | Sbjct 80688 AGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGAATGCCTTCTTTATCCTGG 80747 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || ||| | | | | |||||| || || || || | || ||| | || Sbjct 80748 ATCTTGGCTTTCACATTATCGATCGTATCAGATGATTCGACCTCTAATGTTATAGTCTTG 80807 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || ||||| |||||||| Sbjct 80808 CCTGTCAAGGTCTTGACAAAAATTTGCAT 80836 Score = 100 bits (110), Expect = 2e-16 Identities = 169/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||| || | |||||| | ||||||||| ||||| || |||| Sbjct 80823 ACAAAAATTTG--CATGCCGCCGCGTAAGCGCAGCACCAAATGCAGCGTCGATTCCTTTT 80880 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || || || | || || || |||| || ||||| ||||||||||| || |||| Sbjct 80881 GAATGTTGTAGTCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGAC 80940 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||||||| || | || | || || ||||| || || |||| | | | | Sbjct 80941 GCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCGATTG 81000 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | || ||| || || |||| ||| ||| | || || ||||| || || |||||||| | Sbjct 81001 TGTCAGACGATTCAACTTCCAACGTAATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCT 81060 Query 39281 GCAT 39284 |||| Sbjct 81061 GCAT 81064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545343480737