Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq23 118 7e-22 seq47 111 1e-19 >seq23 Length=2864373 Score = 118 bits (130), Expect = 7e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || |||||||| || || || |||||||| ||||| || || Sbjct 1571341 AACATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAAGTCGAGTCT 1571400 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||| || | || | | || || || ||| ||||| || || | || || ||| Sbjct 1571401 TCCGACTCTATCGAGAACGTCAAGCAGAAGATTCAAGACAAGGAGGGCATTCCTCCGGAT 1571460 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || ||||| ||||| || ||||||| | ||||| | ||||||| Sbjct 1571461 CAGCAGCGCCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTCTCCGATTAC 1571520 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 1571521 AACATCCAGAAGGAGTCCAC 1571540 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || || || || ||||| ||||||||||| || | Sbjct 1571800 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAAGTTGAGTCATCT 1571859 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || | |||| | || || || || ||||| || ||| | || || || || Sbjct 1571860 GACTCTATCGAAAATGTGAAGCAGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAG 1571919 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || ||||| | |||||| | || |||||| Sbjct 1571920 CAGCGTCTCATTTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAAC 1571979 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || ||||| || | ||||| ||| Sbjct 1571980 ATCCAGAAGGAGTCTACTCTGCATTTGGTT 1572009 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || || || || || || || || ||||| || | Sbjct 1572028 ATGCAGATTTTCGTCAAGACGCTGACCGGCAAGACCATTACACTTGAGGTTGAGTCATCT 1572087 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | |||||| | || || || || ||||| || ||| | || || || || Sbjct 1572088 GACTCGATTGAAAATGTGAAGCAGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAG 1572147 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || || || || | ||||| | ||| ||||| Sbjct 1572148 CAGCGTCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAAT 1572207 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 1572208 ATCCAGAAGGAGTCCAC 1572224 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || || || || ||||| ||||| ||||| || | Sbjct 1571572 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTCGAGGTTGAGTCGTCC 1571631 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | |||| | | || || || || ||||| || || | || || || || Sbjct 1571632 GACTCGATTGAGAACGTCAAGCAGAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAG 1571691 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| ||||| || || || || | |||||| | ||||||||| Sbjct 1571692 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCTGATTACAAC 1571751 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| || ||||| | || || ||| Sbjct 1571752 ATTCAAAAGGAATCCACCCTTCACTTGGTT 1571781 >seq47 Length=1968370 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || ||||| || || || || ||||| || ||| | Sbjct 81292 ATGCAGATCTTCGTCAAGACACTTACCGGAAAGACTATAACCCTTGAAGTCGAGTCCTCT 81233 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || ||||| ||||| | ||||| || || Sbjct 81232 GACACCATTGACAATGTCAAGTCCAAGA-TTCAGGACAAGGAAGGCATCCCGCCTGACCA 81174 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||||||||| || |||| ||||| | |||||||| Sbjct 81173 GCAGCGTCTGATCTTTGCCGGCAAACAACTCGAGGACGGTCGCACCCTCTCGGATTACAA 81114 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 81113 CATTCAGAAGGAATCGAC 81096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009398144892