Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq23 152 1e-31 seq47 118 3e-21 >seq23 Length=2864373 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||| ||||| || || |||| |||||| |||| | || | ||||| Sbjct 1572239 AGCACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGGCCATCC 1572180 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| |||||||| || || ||||| || |||||||| ||||||||| Sbjct 1572179 TCGAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCT 1572120 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||||| ||| || | ||| || | || || || | || || ||| Sbjct 1572119 TGGATCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCAACCTCAAGTGTAATGGTC 1572060 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 1572059 TTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 1572028 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| || || || |||| ||||| || | | ||| | |||||||| |||||| Sbjct 1572002 TGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGC 1571943 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||| || || || || ||||| || |||||||| ||||||||||||||||| Sbjct 1571942 TTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTC 1571883 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||||| |||||| | ||| || | || || || | ||||| |||||||| ||| Sbjct 1571882 TGCTTCACATTTTCGATAGAGTCAGATGACTCAACTTCGAGGGTGATGGTCTTGCCGGTC 1571823 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| | ||||| Sbjct 1571822 AAGGTCTTGACGAAAATCTGCAT 1571800 Score = 132 bits (146), Expect = 1e-25 Identities = 162/220 (74%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||||||||| || || |||| |||||||||| | || | |||||| Sbjct 1571555 AGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCT 1571496 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| ||||| ||||| || || || || || || ||||| || ||||||||| Sbjct 1571495 TCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCT 1571436 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||| || ||||| | ||| || | || || || | ||||| ||| Sbjct 1571435 TGAATCTTCTGCTTGACGTTCTCGATAGAGTCGGAAGACTCGACTTCAAGAGTGATGGTC 1571376 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGGT 225721 ||||| || | || || | ||| | ||||| || |||| Sbjct 1571375 TTGCCGGTGAGGGTCTTGACGAAAATCTGCATGTT-TGGT 1571337 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || |||||||| ||||| | |||||||| | | ||| | ||||| Sbjct 1571783 AGAACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGGCCATCC 1571724 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || || ||||| || || || || ||||||||| Sbjct 1571723 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCT 1571664 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||| || || || | ||| || | || || || | ||||| ||| Sbjct 1571663 TGGATCTTCTGCTTGACGTTCTCAATCGAGTCGGACGACTCAACCTCGAGGGTGATAGTC 1571604 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | || | |||||| Sbjct 1571603 TTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1571572 >seq47 Length=1968370 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || ||||| ||||| | ||||| || | | ||| | || || || |||||| Sbjct 80862 TGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGAGAGAGTGCGACCGTCCTCGAGCTGC 80921 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| || || || || || || ||||| |||||||||||||| ||||| Sbjct 80922 TTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTG 80981 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||||| ||||| || | ||| || || ||||| || |||||||| ||| Sbjct 80982 GCCTTGACATTGTCGATTGTGTCAGACGATTCAACTTCCAACGTAATAGTCTTGCCGGTC 81041 Query 225691 AAAGTTTT 225698 | ||| || Sbjct 81042 AGAGTCTT 81049 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||| || ||||| || || | |||||||| | | || | || || Sbjct 81081 AGCACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGACCGTCC 81140 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || || ||||| || || || ||||| ||||| || ||||||||||| Sbjct 81141 TCGAGTTGTTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 81200 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| || |||||||| |||| || || || | || || ||| Sbjct 81201 TGAATCTTGGACTTGACATTGTCAATGGTGTCAGAGGACTCGACTTCAAGGGTTATAGTC 81260 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | ||||| Sbjct 81261 TTTCCGGTAAGTGTCTTGACGAAGATCTGCAT 81292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530451314006