Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 >seq1 Length=4845341 Score = 100 bits (110), Expect = 2e-16 Identities = 233/354 (66%), Gaps = 18/354 (5%) Strand=Plus/Minus Query 29606 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCA 29665 || ||||||||||||| || || | | ||||| | | |||| || | || || Sbjct 663116 AGAGTGGGAAAGGGTCGCGGTTCGCGTTGCAGCTGTTGCTTGAGCGCATCGATATGATCG 663057 Query 29666 AGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29725 | |||| ||| | || |||| ||| ||||||||||| ||||| || || | ||||| Sbjct 663056 ACATAGATGTGGGTGTCGCCCATGGTATGGACAAACTCGCCCGGCTCGAGGTCAGTGACA 662997 Query 29726 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785 ||||| |||||| | || || || | || || ||||| |||||||| ||||| ||| Sbjct 662996 TGAGCGATCATGCATGTCAGCAGCGCATACGATGCAATGTTGAAGGGCACACCGAGGCCC 662937 Query 29786 ATGTCCCCTGACCTCTGGTAGA---------GCTGGCACGAGAGCTCTCCGTCGC----- 29831 ||||| | || | |||||| | | ||| || |||| || |||| Sbjct 662936 ATGTCGCACGAGCGCTGGTATAAAACGCAAGACAGGCGCGCACGCTCACCCTCGCGAGGG 662877 Query 29832 ----TCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCT 29887 || ||||| ||||| | |||||| || || || || ||||||| | || Sbjct 662876 GTTGAGACATAAAATTGACAAAAGGCATGACAAGGTGGCAGAGCCATGATGGGGATATCG 662817 Query 29888 TTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATG 29941 |||||||| || | | |||||||| | ||| |||||||| || ||| Sbjct 662816 GCTGGGTTCCATGCGGATAGAATGATGCGACGGTCAGTAGGGTTGTTTCTAATG 662763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406162957444414