Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017-
04-20] 49 sequences; 30,745,403 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq1 100 2e-16
>seq1
Length=4845341
Score = 100 bits (110), Expect = 2e-16
Identities = 233/354 (66%), Gaps = 18/354 (5%)
Strand=Plus/Minus
Query 29606 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCA 29665
|| ||||||||||||| || || | | ||||| | | |||| || | || ||
Sbjct 663116 AGAGTGGGAAAGGGTCGCGGTTCGCGTTGCAGCTGTTGCTTGAGCGCATCGATATGATCG 663057
Query 29666 AGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29725
| |||| ||| | || |||| ||| ||||||||||| ||||| || || | |||||
Sbjct 663056 ACATAGATGTGGGTGTCGCCCATGGTATGGACAAACTCGCCCGGCTCGAGGTCAGTGACA 662997
Query 29726 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785
||||| |||||| | || || || | || || ||||| |||||||| ||||| |||
Sbjct 662996 TGAGCGATCATGCATGTCAGCAGCGCATACGATGCAATGTTGAAGGGCACACCGAGGCCC 662937
Query 29786 ATGTCCCCTGACCTCTGGTAGA---------GCTGGCACGAGAGCTCTCCGTCGC----- 29831
||||| | || | |||||| | | ||| || |||| || ||||
Sbjct 662936 ATGTCGCACGAGCGCTGGTATAAAACGCAAGACAGGCGCGCACGCTCACCCTCGCGAGGG 662877
Query 29832 ----TCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCT 29887
|| ||||| ||||| | |||||| || || || || ||||||| | ||
Sbjct 662876 GTTGAGACATAAAATTGACAAAAGGCATGACAAGGTGGCAGAGCCATGATGGGGATATCG 662817
Query 29888 TTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATG 29941
|||||||| || | | |||||||| | ||| |||||||| || |||
Sbjct 662816 GCTGGGTTCCATGCGGATAGAATGATGCGACGGTCAGTAGGGTTGTTTCTAATG 662763
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406162957444414
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |