Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1 154 1e-32 >seq1 Length=4845341 Score = 154 bits (170), Expect = 1e-32 Identities = 426/647 (66%), Gaps = 22/647 (3%) Strand=Plus/Minus Query 27100 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCC 27159 || ||||||||||||| || || | | ||||| ||| |||| || | ||||| Sbjct 663116 AGAGTGGGAAAGGGTCGCGGTTCGCGTTGCAGCTGTTGCTTGAGCGCATCGATATGATCG 663057 Query 27160 AGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 27219 | |||| ||| | ||| |||| ||| ||||||||||| ||||| || || | ||||| Sbjct 663056 ACATAGATGTGGGTGTCGCCCATGGTATGGACAAACTCGCCCGGCTCGAGGTCAGTGACA 662997 Query 27220 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 27279 ||||| |||||| | || || || | || || ||||| ||||| || ||||| ||| Sbjct 662996 TGAGCGATCATGCATGTCAGCAGCGCATACGATGCAATGTTGAAGGGCACACCGAGGCCC 662937 Query 27280 ATGTCCCCCGACCTCTGGTAGA----GC-TGACA----CGAGAGCTCTCCATCGC----- 27325 ||||| | ||| | |||||| | || |||| || |||| || |||| Sbjct 662936 ATGTCGCACGAGCGCTGGTATAAAACGCAAGACAGGCGCGCACGCTCACCCTCGCGAGGG 662877 Query 27326 -TT---ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 || || ||||| ||||| | ||| || || || || |||||||||| | | || Sbjct 662876 GTTGAGACATAAAATTGACAAAAGGCATGACAAGGTGGCAGAGCCATGATGGGGATATCG 662817 Query 27382 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 27441 |||||||| ||| | | |||||||| | ||| |||||||| || ||| || Sbjct 662816 GCTGGGTTCCATGCGGATAGAATGATGCGACGGTCAGTAGGGTTGTTTCTAATGGTATCA 662757 Query 27442 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC--TACCCTCATGTCCGTGT 27499 | | | || || || || || || || | || || || | || |||| ||| Sbjct 662756 ATGATCTGCTGGAGTTGGTCGACGCCTTGTCCTGTATAATCCGTA-TCGCA-GTCCTTGT 662699 Query 27500 ACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCC 27559 | |||||||| || || | ||| ||||| ||||| || || || || || || |||| | Sbjct 662698 ATTCTGCTCCAAAGTGGCGCCACTGGAATCCGTAGACGGGGCCGAGATCGCCTTCTTTGC 662639 Query 27560 TGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA 27619 ||| | || | ||| | ||| || | ||||||||| | ||||| ||||| | Sbjct 662638 GGTGGGACAGTCCACGAGAGTCGAGAAACTCACGTGAACCGTTGCCATCCCAAATCTTGA 662579 Query 27620 CCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCT 27679 ||| |||| || | | | ||| || || ||| |||||| || ||||| | Sbjct 662578 TGCCCCGCTCGCTCAGGTGATGGCTGTTCGTATCGCCCTTGATGAACCAAAGGAGCTCTT 662519 Query 27680 CCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 27726 ||| ||| | ||||||| | || || || || | |||||| Sbjct 662518 CCAGTACGCCACGGAAAAAGACTCGTTTTGTGGTCAGCAATGGAAAC 662472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506979334919