Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq47 156 6e-33 >seq47 Length=1968370 Score = 156 bits (172), Expect = 6e-33 Identities = 712/1121 (64%), Gaps = 21/1121 (2%) Strand=Plus/Plus Query 77493 ATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 77552 ||||||||||| || | || | || || | ||| || || | ||| | | | || || Sbjct 705821 ATAAAGGCATCGGCAAGACCGTTGACACCTAGACCGATGGGACGATGACGCATGTTTGAG 705880 Query 77553 ATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACA 77612 | |||||| || | |||||| || || ||||| ||||| || || | || | Sbjct 705881 CGCTCAGCTTCAGGCACAGGATAGTAGTTGATGTCGATAATCTTGTTTAAGTTGCGCGTC 705940 Query 77613 ACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAAT-CTTCC--ATCTATAACAAAC 77669 || || || || || || | | || | |||||||| |||| || | ||||| Sbjct 705941 ACAACCTTGACAACATCGTGCAACTTTTGGAAATCAAACACTTCGCGATTCTTGACAAAG 706000 Query 77670 ATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGT 77729 || |||||| | | || | ||| || || ||||| || | | ||| || | Sbjct 706001 GTGGGCAAAGCCAGACTGGCCAAATTGCATACAGCTACTTCGTCCGGACTGGAGTACTCG 706060 Query 77730 ATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTT 77789 | ||||| ||||| ||||| || || ||||| ||||||| || || ||||| || Sbjct 706061 ACGATCTCTGTACAGAGATTGCTGCACTTGATCGTGCCCAAGTTCTGCTGGTTTGATTTG 706120 Query 77790 TTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATA 77849 || || | |||||| || || || || || || || || | |||| || | Sbjct 706121 CGGTTACACGCGTCCTTGTACAGCATGAAGGGGCCACCTGTCTCGGTTTGTGCCTCCAAG 706180 Query 77850 ATAGATTTCCAGACGACTCTA-GCTTTTATCATAGATTTGTATCGC----CTCTCTCTTT 77904 || | | ||||| | ||| || || | || | ||| ||| | || | || Sbjct 706181 ATGGCATACCAGA-GCTTCTGTGCCTTGA-CA---ACTTGGCGCGCGCGACCTTCACGTT 706235 Query 77905 CATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATT 77964 | |||||| || ||| ||||| | || ||||| || || | | || || || Sbjct 706236 CGTATTGATGGTACAGCTCCTCAAACTTCTCGCCCCACACCTCGTGAAGACCTGGTGCTT 706295 Query 77965 CATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAG 78024 | ||||||| | ||| ||| ||||||| || | || || ||||| || ||||||| Sbjct 706296 CGCTTGGGCAGAACAAGCTCCATTCACCATTCTCTTCGACACGCTTCATGAAAAGATCAG 706355 Query 78025 GTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTT 78084 | ||||||| ||| || || || || | | || || || || || || ||||| Sbjct 706356 GGATCCATAAGGCATAGAACAGGTCACGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGC 706415 Query 78085 TAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTC 78144 || || || ||| | | ||| | ||||| || || || || || || | | | | Sbjct 706416 GGAGGTCCAGGAACGAGAACACATCCGGGTGCCAGGGCTCGAGGTAGATGGCGAAAGCAC 706475 Query 78145 CAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACA 78204 | || || || || || || ||||| | ||| | || |||||||| ||||| | | || Sbjct 706476 CCGGGCGCTTGTTGCCACCTTGATCGACATAGCGAGCCGTGTTATTGTAAACGCGGAGCA 706535 Query 78205 TTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAA 78264 | || | || ||||| || ||||| || |||| || || || || || | Sbjct 706536 TAGGCACGATGCCGTTGGAATAACCATTGGTACCAGCGATGTACGAGCCGGAAGCCCGGA 706595 Query 78265 TATTACTAATGGATATC----CCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGT 78320 | || ||||| | || || || || || |||| || ||| | | |||| | Sbjct 706596 T----CTGGTGGATGTTGAGACCGATGCCACCCGCGGTCTTGGAAATTTGGGAGCAAATT 706651 Query 78321 TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 |||| || || ||||| || || || || ||| ||||| | | | ||| ||| Sbjct 706652 TTCAGAGTTTCATAGATGCCTTCAATCGAATCCTCCTTCATGGTCAACAAAAAGCAGGAC 706711 Query 78381 GACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCAT 78440 |||| || || || || || || || || | || ||| || || ||||| || Sbjct 706712 GACAGCTGCGGACGAGGGGTACCGGCGTTGAACAGGGTGGGACTCGCGTGGGTAAAGTAT 706771 Query 78441 TTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCT 78500 || ||||| | || ||||| || ||||| || ||| || ||| ||||| || Sbjct 706772 TTCTCAGACATGAGGTTGTAAGTCTCAATGGCGCCTTCGATATCCTCGCCGTGAATACCC 706831 Query 78501 ACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAAC 78560 || || |||||||||||||| ||||| |||| || | |||| || | |||| | Sbjct 706832 ACAGCCACACGCATCAACATGTGCTGCGGTCGCTCGGCAATCTTGCCGTTGAGCTTCAGC 706891 Query 78561 AAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 || || | ||||| || || || ||||| |||||||| Sbjct 706892 AAATAAGCACGTTCCAGCGTCTTGAAGCCAAAGTAGTTGTA 706932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668374515360