Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq47 196 7e-45 >seq47 Length=1968370 Score = 196 bits (216), Expect = 7e-45 Identities = 589/903 (65%), Gaps = 20/903 (2%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||| | || ||||| || || | | ||| || ||| | || || | ||| | Sbjct 706256 TCAAACTTCTCGCCCCACACCTCGTGAAGACCTGGTGCTTCGCTTGGGCAGAACAAGCTC 706315 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || ||||||| || | || || ||||| || |||||||| ||||||| ||| || Sbjct 706316 CATTCACCATTCTCTTCGACACGCTTCATGAAAAGATCAGGGATCCATAAGGCATAGAAC 706375 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 || || || | | | || || || || || ||||| || || |||||| | Sbjct 706376 AGGTCACGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGGAGGTCCAGGAACGAGAAC 706435 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 | ||| | ||||| || || || || || || | | ||||||| || || || || || Sbjct 706436 ACATCCGGGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGGCGCTTGTTGCCACCT 706495 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 ||||| | ||| | || |||||||| ||||| | | ||| || | |||||||| || Sbjct 706496 TGATCGACATAGCGAGCCGTGTTATTGTAAACGCGGAGCATAGGCACGATGCCGTTGGAA 706555 Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT----AG 76875 |||||| || |||| || || || | || || || || | ||| || Sbjct 706556 TAACCATTGGTACCAGCGATGTACGAGCCGGAAGCCCGGAT----CTGGTGGATGTTGAG 706611 Query 76876 GCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCC 76935 || || || || || | || || ||| | | || ||||| || ||||||||||| Sbjct 706612 ACCGATGCCACCCGCGGTCTTGGAAATTTGGGAGCAAATTTTCAGAGTTTCATAGATGCC 706671 Query 76936 CTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGT 76995 || || ||| ||| ||||| | | | ||| ||| |||| || || || || Sbjct 706672 TTCAATCGAATCCTCCTTCATGGTCAACAAAAAGCAGGACGACAGCTGCGGACGAGGGGT 706731 Query 76996 TCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTA 77055 || || || |||| || ||| || || || || |||| ||||| | || ||||| Sbjct 706732 ACCGGCGTTGAACAGGGTGGGACTCGCGTGGGTAAAGTATTTCTCAGACATGAGGTTGTA 706791 Query 77056 TGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACAT 77115 || ||||| | |||| |||||| ||||| || ||||| |||||||||||||| Sbjct 706792 AGTCTCAATGGCGCCTTCGATATCCTCGCCGTGAATACCCACAGCCACACGCATCAACAT 706851 Query 77116 ATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175 ||||| ||||| || || |||| || | |||| ||| || | ||||| || Sbjct 706852 GTGCTGCGGTCGCTCGGCAATCTTGCCGTTGAGCTTCAGCAAATAAGCACGTTCCAGCGT 706911 Query 77176 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTT 77235 || || ||||| |||||||| || || | ||||| || || | || || || Sbjct 706912 CTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGATCGTAGATGATGGCTGAGTTAAGACG 706971 Query 77236 GTCCTTATATTTGGTAACAATATCCATGACAGTGGTA---GAAATAATTGGAGAT--CGT 77290 || || || ||| ||| | | ||||| | || | || |||| | | | Sbjct 706972 CTCTGCATTCTTCATAATGATAGC---GTGAGTGGCATCCGACACAAGAGGAGCTTGCTT 707028 Query 77291 ATTCCATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAG-ttt 77349 ||| |||| ||||| | |||| | ||||| || || |||| || | | || || Sbjct 707029 ATT--GGTTTTGGGATTGATATAGCCATGCAAGTCATCAATCACGT-GCGAGAAAGCCTT 707085 Query 77350 ttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGG 77409 || ||||| ||||| || || || ||||| || | |||||| || || ||||||||||| Sbjct 707086 CTTCGTTTCTTTGTGCAGGTTGGACACGGCGATACGAGCAGCAAGGATGGCATAGTCAGG 707145 Query 77410 ATG 77412 ||| Sbjct 707146 ATG 707148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933963327680