Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq47 140 2e-28 seq23 132 3e-26 >seq47 Length=1968370 Score = 140 bits (154), Expect = 2e-28 Identities = 161/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||||| || ||||| |||||||| |||||||| || | ||| ||| |||| Sbjct 80852 CAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGAGAGAGTGCGACCGTC 80911 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| || |||||||||| |||||||||||||| ||| | |||||||| || Sbjct 80912 CTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTC 80971 Query 44245 CGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 ||||| ||| || ||| | || ||||| | ||||| || |||| |||||| Sbjct 80972 TTGAATCTTGGCCTTGACATTGT--CGATTGTGTCAGACGATTCAACTTCCAACGTAATA 81029 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || || |||||||| ||||| ||||| Sbjct 81030 GTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 81064 Score = 125 bits (138), Expect = 5e-24 Identities = 147/197 (75%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| || ||||||||||| | ||| ||| |||| || || || || ||||||||| Sbjct 81102 TCCTTCTGAATGTTGTAATCCGAGAGGGTGCGACCGTCCTCGAGTTGTTTGCCGGCAAAG 81161 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264 |||| ||||||||| || | || | |||||||| ||| ||||| ||| || || Sbjct 81162 ATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTG 81221 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | |||||||| | ||| || || || | || || |||||||| || || ||||| | Sbjct 81222 T--CAATGGTGTCAGAGGACTCGACTTCAAGGGTTATAGTCTTTCCGGTAAGTGTCTTGA 81279 Query 44325 CGAAGATTTGCATGATG 44341 ||||||| ||||||||| Sbjct 81280 CGAAGATCTGCATGATG 81296 >seq23 Length=2864373 Score = 132 bits (146), Expect = 3e-26 Identities = 158/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || || || ||| |||||| |||||||||||||||| ||| ||| | || || Sbjct 1571553 CACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCTTC 1571494 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || |||||||| | ||||||||||| | ||| | || ||||| || Sbjct 1571493 CAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTG 1571434 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||||||||| | |||| | || | ||||| || || || || | || || |||| Sbjct 1571433 AATCTTCTGCTTGAC-GTTCTCGATAGAGTCGGAAGACTCGACTTCAAGAGTGATGGTCT 1571375 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || ||||||||||| ||||| || |||||| Sbjct 1571374 TGCCGGTGAGGGTCTTGACGAAAATCTGCATG 1571343 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||||| ||||||||||| | ||| ||| | || || Sbjct 1571780 ACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGGCCATCCTCG 1571721 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||| || | ||| | || ||||| || Sbjct 1571720 AGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGG 1571661 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||||||||| | |||| | || | ||||| || || ||||| | || || ||||| Sbjct 1571660 ATCTTCTGCTTGAC-GTTCTCAATCGAGTCGGACGACTCAACCTCGAGGGTGATAGTCTT 1571602 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | |||||| || ||||||||||| Sbjct 1571601 GCCAGTCAAGGTCTTGACAAAGATTTGCAT 1571572 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || || || ||| |||||| ||||| ||||| |||| || ||| | || || Sbjct 1572237 CACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGGCCATCCTC 1572178 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || |||||||| | ||||||||| || | ||| | ||| ||||| || Sbjct 1572177 GAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTG 1572118 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||||||||||| || | || | ||| | || || ||||| | ||||| ||||| Sbjct 1572117 GATCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCAACCTCAAGTGTAATGGTCTT 1572058 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| ||||| || ||||| Sbjct 1572057 GCCGGTCAGCGTCTTGACGAAAATCTGCAT 1572028 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||||||||||||||| || | || || |||| || |||||||| || ||||| Sbjct 1572447 CTCCTTTTGGATGTTGTAGTCCGAAAGCGTACGACCGTCCTCAAGCTGCTTGCCAGCAAA 1572388 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||| | |||||||| || | ||| | || ||||| ||| ||||||||||| | || Sbjct 1572387 GATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCTT-GACGT 1572329 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | |||| ||| | || || ||||| | || || ||||| || || | |||||| | Sbjct 1572328 TCTCAATGGAGTCAGACGACTCAACCTCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGA 1572269 Query 44325 CGAAGATTTGCAT 44337 | ||||| ||||| Sbjct 1572268 CAAAGATCTGCAT 1572256 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| || | ||| ||| | || || |||||||| || || || Sbjct 1571991 CTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAA 1571932 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 || | ||||||||| || | ||| | ||| ||||| || ||||||||||||| | Sbjct 1571931 AATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTCTGCTTCACATT 1571872 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || | ||| | || || || || | || || ||||| || || | |||||| || Sbjct 1571871 TTCGATAGAGTCAGATGACTCAACTTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 1571812 Query 44326 GAAGATTTGCAT 44337 ||| || ||||| Sbjct 1571811 GAAAATCTGCAT 1571800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990185018233