Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq23 150 4e-31 seq47 138 3e-27 >seq23 Length=2864373 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || |||||||||||||| || || ||| Sbjct 1572259 CAGATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTCGAGGTTGAGTCGTCTGAC 1572318 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||| ||||||||||| || |||||||||||||| || || ||||||||||||||||| Sbjct 1572319 TCCATTGAGAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAG 1572378 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || || || | || ||| | || || ||| || Sbjct 1572379 CGCCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGTACGCTTTCGGACTACAACATC 1572438 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || |||||||| Sbjct 1572439 CAAAAGGAGTCGACCCTCCATCTTGT 1572464 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || ||||| || || || || || ||| Sbjct 1571347 CAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAAGTCGAGTCTTCCGAC 1571406 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | |||||||||||||| || |||||||| ||||| || || || |||||||| ||||| Sbjct 1571407 TCTATCGAGAACGTCAAGCAGAAGATTCAAGACAAGGAGGGCATTCCTCCGGATCAGCAG 1571466 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | |||||||| | || || ||||||| ||| || Sbjct 1571467 CGCCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTCTCCGATTACAACATC 1571526 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || |||||||| Sbjct 1571527 CAGAAGGAGTCCACTCTCCATCTTGT 1571552 Score = 147 bits (162), Expect = 5e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || || || |||||||||||||| || || ||| Sbjct 1571575 CAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTCGAGGTTGAGTCGTCCGAC 1571634 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||||||||| || ||||| || ||||| || || ||||||||||||||||| Sbjct 1571635 TCGATTGAGAACGTCAAGCAGAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAGCAG 1571694 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||| ||||| | ||||| | ||||| ||| | Sbjct 1571695 CGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCTGATTACAACATT 1571754 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| ||||| || || || |||| || Sbjct 1571755 CAAAAGGAATCCACCCTTCA-CTTGGTT 1571781 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | || || || || ||||||||||| || || || ||| Sbjct 1571803 CAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAAGTTGAGTCATCTGAC 1571862 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || || || || ||||| || ||||| || || || |||||||||||||| Sbjct 1571863 TCTATCGAAAATGTGAAGCAGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAGCAG 1571922 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| |||||||| | ||||| | || || ||| || Sbjct 1571923 CGTCTCATTTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAACATC 1571982 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || |||||| | ||| Sbjct 1571983 CAGAAGGAGTCTACTCTGCATTTGGTT 1572009 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || || || || || ||||| || || ||| Sbjct 1572031 CAGATTTTCGTCAAGACGCTGACCGGCAAGACCATTACACTTGAGGTTGAGTCATCTGAC 1572090 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || || || ||||| || ||||| || || || |||||||||||||| Sbjct 1572091 TCGATTGAAAATGTGAAGCAGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAGCAG 1572150 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || |||||||| ||||| | || ||| |||| || || || Sbjct 1572151 CGTCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAATATC 1572210 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || |||||||| Sbjct 1572211 CAGAAGGAGTCCACCCTCCATCTTGT 1572236 >seq47 Length=1968370 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| || || ||||| || || || ||| ||| Sbjct 81289 CAGATCTTCGTCAAGACACTTACCGGAAAGACTATAACCCTTGAAGTCGAGTCCTCTGAC 81230 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| ||||| ||||| || |||||||| Sbjct 81229 ACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 81170 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| ||||| ||||| || || | || || | ||||| ||| | Sbjct 81169 CGTCTGATCTTTGCCGGCAAACAACTCGAGGACGGTCGCACCCTCTCGGATTACAACATT 81110 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 81109 CAGAAGGAATCGACCCTCCATCTCGT 81084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730444282506