Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq23 143 2e-29 seq47 140 3e-28 seq48 116 3e-21 seq46 96.9 3e-15 >seq23 Length=2864373 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || ||| ||||||||| || || |||||||| Sbjct 1572254 CCACCACGGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAA 1572195 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||| || || || || ||||| ||||||| ||| Sbjct 1572194 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGA 1572135 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| || ||||||| | | ||| ||||| ||| Sbjct 1572134 ATACCCTCCTTGTCTTGGATCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCAACC 1572075 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || ||||||||||| |||||||||||||| Sbjct 1572074 TCAAGTGTAATGGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 1572028 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || ||| ||||||||| ||||| || |||||| Sbjct 1571570 CCACCACGGAGACGGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAG 1571511 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || | ||||||||| || || || |||||||| || |||| ||| Sbjct 1571510 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGGA 1571451 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| || || ||||| | | | || |||| ||||| || Sbjct 1571450 ATGCCCTCCTTGTCTTGAATCTTCTGCTTGACGTTCTCGATAGAGTCGGAAGACTCGACT 1571391 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || || || || || || ||||| ||||||||||||||||| Sbjct 1571390 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGTT 1571341 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| |||||| || ||||||||| ||||| ||||| ||| Sbjct 1572026 CCACCACGCAGGCGGAGAACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAG 1571967 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| ||||| || || ||||| ||||||| ||| Sbjct 1571966 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGA 1571907 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| || ||||||| | || ||| ||||| || Sbjct 1571906 ATACCCTCCTTGTCTTGGATCTTCTGCTTCACATTTTCGATAGAGTCAGATGACTCAACT 1571847 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| ||||| |||||||||||||| Sbjct 1571846 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 1571800 Score = 118 bits (130), Expect = 1e-21 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||| || || |||||| || ||||| ||||| || Sbjct 1572482 CCGCCACGAAGACGGAGGACAAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAA 1572423 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || ||||||||||| || || || |||||||| ||||||| || Sbjct 1572422 AGCGTACGACCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGG 1572363 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | || |||||||||| || || ||||| |||| | || | ||| |||||| Sbjct 1572362 ATGCCCTCCTTGTCCTGAATCTTCTGCTT----GACGTTCTCAATGGAGTCAGACGACTC 1572307 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || |||| ||||| || || |||||||| Sbjct 1572306 AACCTCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 1572256 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| || || ||| ||||| |||||||| || || ||| Sbjct 1571798 CCACCACGCAGGCGGAGAACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAG 1571739 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || || |||||||| ||||||| || Sbjct 1571738 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGG 1571679 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | || ||||||||| ||| || ||||| |||| | || | |||| |||||| Sbjct 1571678 ATGCCCTCCTTGTCTTGGATCTTCTGCTT----GACGTTCTCAATCGAGTCGGACGACTC 1571623 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || |||| ||||| || || || ||||| Sbjct 1571622 AACCTCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1571572 >seq47 Length=1968370 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||||| || | ||||| ||||||||| ||||| |||||||| ||||| || Sbjct 80837 GCCGCCGCGTAAGCGCAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGA 80896 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| |||| |||||||||||||| || || ||||| ||||| || || | || Sbjct 80897 GAGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGG 80956 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||||||| | ||| | || || | || | | | ||||| ||| || | Sbjct 80957 AATGCCTTCCTTGT-CTTGAATCTTGGCCTTGACATTGTCGATTGTGTCAGACGATTCAA 81015 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| ||| || || || || ||||| ||||| || || |||||||| Sbjct 81016 CTTCCAACGTAATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 81064 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || || |||||||||||||| || || ||| Sbjct 81066 CCACCACGGAGACGAAGCACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAATCCGAG 81125 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||| || |||||||| || ||||| ||||| ||||| | || Sbjct 81126 AGGGTGCGACCGTCCTCGAGTTGTTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGG 81185 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| | || | | || | | | ||||| ||||| || Sbjct 81186 ATGCCTTCCTTGTCC-TGAATCTTGGACTTGACATTGTCAATGGTGTCAGAGGACTCGAC 81244 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | ||||| || || || || || ||||| ||||| ||||||||| Sbjct 81245 TTCAAGGGTTATAGTCTTTCCGGTAAGTGTCTTGACGAAGATCTGCATG 81293 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||| |||||||||| |||||| ||||| || ||||| || Sbjct 80610 CCGCCACGCAGACGCAGGACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGAC 80669 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| |||||||||||||| || || || || ||||||||||| | ||| Sbjct 80670 AAAGTCCGTCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGA 80729 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || || ||| || | || |||| || | | || || || || || Sbjct 80730 ATGCCTTCTTTATCC-TGGATCTTGGCTTTCACATTATCGATCGTATCAGATGATTCGAC 80788 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | ||||| || || || |||| ||||| || ||||| |||||| Sbjct 80789 CTCTAATGTTATAGTCTTGCCTGTCAAGGTCTTGACAAAAATTTGCATG 80837 >seq48 Length=1814144 Score = 116 bits (128), Expect = 3e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || || ||||||||||||||| ||||| || Sbjct 1641605 CCACCACGGAGACGGAGCACAAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAA 1641546 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| |||||||||||||| ||||| ||||| ||||| ||||||| |||| Sbjct 1641545 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGGGGA 1641486 Query 41756 ACGC 41759 | || Sbjct 1641485 ATGC 1641482 >seq46 Length=2048726 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || || ||||||||| ||||| |||||||| Sbjct 962338 CCACCACGGAGACGGAGCACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 962397 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| ||||| ||||| ||||| || |||| |||| Sbjct 962398 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGA 962457 Query 41756 A 41756 | Sbjct 962458 A 962458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303716838800