Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Synchytrium_20endobioticum_20[genbank_20GCA_5F001399855.1_202015-10- 19] 423 sequences; 2,081,121 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq389 127 2e-24 >seq389 Length=4736 Score = 127 bits (140), Expect = 2e-24 Identities = 328/500 (66%), Gaps = 0/500 (0%) Strand=Plus/Plus Query 154605 ACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGA 154664 ||||| || ||| | |||||||||||||| ||| ||| | || || || ||||| || Sbjct 2606 ACAGGCTTCGATGCCATATCATTACAACCAAACAGTGGAGCTCAAGGCGAATATGCCGGC 2665 Query 154665 CTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTG 154724 || ||| || ||| |||| ||| || || || | || | || || | Sbjct 2666 CTAAGAGCCATTAGAGCCTACCTTCACTCCAAGGGCGAAGAAAGTCGAGACGTTTGCCTA 2725 Query 154725 ATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTT 154784 ||||||| || || ||||| || || || || || | |||| || ||||||||| Sbjct 2726 ATACCAGTTTCCGCCCATGGTACCAACCCAGCATCAGCCGCCATGTGTGGTATGAAAGTT 2785 Query 154785 GTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAGCA 154844 || |||||| |||||||| |||||| | ||| | ||||||| | | || ||| Sbjct 2786 GTCACTGTCAAATGTGATGAGCTAGGTAACCTGGACTTATCAGATCTACGGGAAAAGGCA 2845 Query 154845 ATCATGAATACATTTGAACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTA 154904 | | | || || || | || ||| | || || ||||| || ||||||| Sbjct 2846 AAAAAGCATGCAACGAGCCTCGCCGCCATCATGGTCACCTATCCATCAACGTATGGTGTC 2905 Query 154905 TTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATAT 154964 |||||| | || | | | | ||| | ||| | |||| |||||||||| || || Sbjct 2906 TTTGAAGACAGTATCAAAGAAGTTTGTGAAATCATACATGTTCATGGTGGTCAAGTGTAC 2965 Query 154965 CTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCA 155024 | ||||| || || || || || || | ||| | ||||| || ||||| Sbjct 2966 ATGGATGGTGCTAACCTGAACGCCCAAATGGGATTGTGTAAACCTGCAGAAATCGGTGCT 3025 Query 155025 GATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCT 155084 ||||| ||||| | || || || || || || |||||||| ||||| ||||| || ||| Sbjct 3026 GATGTTTGTCACTTGAATTTGCACAAGACGTTTTGTATTCCTCATGGTGGTGGTGGACCT 3085 Query 155085 GGCGTAGGTCCTATAGGTGT 155104 || | || ||||| || || Sbjct 3086 GGTATGGGACCTATTGGAGT 3105 Score = 93.3 bits (102), Expect = 5e-14 Identities = 170/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 ||| | ||||| | || | |||||||| || || |||||||| || || || | Sbjct 1498 CAACGATTTGGGGTACCACTAGGATATGGTGGCCCACATGCTGCTTTTTTCGCTGTCAAG 1557 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGT 153887 || || | ||||| ||||| ||||| | | ||||| ||| |||| | || Sbjct 1558 GATGAGCACAAGAGGAAGATGCCTGGTCGCTTAATAGGTGTCTCAAAAGATGTTACTGGC 1617 Query 153888 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCA 153947 || ||| ||| ||||| | ||||| ||| | || || ||||| | |||| || || Sbjct 1618 AAACCAGCCTACCGATTATCGCTACAAACTCGTGAACAACATATTCGTCGAGAGAAGGCC 1677 Query 153948 ACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCA 154007 || ||||| || || || || || ||| |||| ||||||||||||| | ||||| | Sbjct 1678 ACTAGTAATATTTGTACTGCCCAAGCATTGCTTGCTAATATGTCTGCCATGTATGCTGTT 1737 Query 154008 TATCATGGT 154016 || |||||| Sbjct 1738 TACCATGGT 1746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579209737412320