Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1005 185 9e-42 seq492 102 8e-17 >seq1005 Length=21531 Score = 185 bits (204), Expect = 9e-42 Identities = 412/613 (67%), Gaps = 13/613 (2%) Strand=Plus/Minus Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653 |||||| | | || ||||| || || || ||||| | || || ||| |||||||||| Sbjct 9922 AACCCCAACAGATTTGTGATGTTTCCAATCAAATACACTGAGATTTGGAACATGTACAAA 9863 Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACA-CGAGCGA 116712 |||||||| || ||||||||||| | ||| ||||| || || | | || | |||| | Sbjct 9862 AAGGCCGAAGCATCGTTCTGGACTGCCGAAGAGGTTGATCTAGCGCATGATATTGAGC-A 9804 Query 116713 CTGGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 |||||| | | || ||||| || | |||| ||||| ||| | ||||||||||| Sbjct 9803 CTGGGAAAACAAACTCAATGACAATGAAAGATATTTTATCAAACACATTCTGGCCTTTTT 9744 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829 || ||| ||||| || || || || ||||| || || | | | ||||| || Sbjct 9743 TGCAGCCTCAGACGGAATAGTGAATGAAAATCTTGTTTTTAACTTTGGTAAAGAGGTTCA 9684 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 | | | || || || |||||||||| || || || |||||||| | ||| || Sbjct 9683 GATACCAGAAGCACGTAGCTTCTACGGATTCCAAATTATGATGGAGAATATCCACAGTGA 9624 Query 116890 AATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGA----AGCTCCGTT 116945 |||||| || | | || ||||| ||| | | | || ||| |||| | || Sbjct 9623 AATGTACTCACTCTTGATAGACACATACATTAAGGAT--GAAGCAGAAAAGAGCTACCTT 9566 Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 || ||||| | || | || || || ||| | || ||| | ||||| | | Sbjct 9565 --TTCAACGCAGTTGAAAACATTCCCTGTATCAGACGCAAAGCCCAATGGGCATTAAAAT 9508 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 |||| | | | |||||| ||| || ||||| || | || ||||| | |||||| Sbjct 9507 GGATAGAAGATAAGGAGGCCAGCTTTGGAGAGCGTCTTGCTGCATTCGCTGTAATCGAGG 9448 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 | ||||| ||||| ||| || || ||||| || ||| | |||||| | || ||||||| Sbjct 9447 GTGTCTTTTTTTCAGGCTCCTTTGCTGCCATCTTCTGGTTGAAGAAAAGAGGGCTCATGC 9388 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | ||||| || ||| ||||| || |||| ||||||||||| || || || |||| Sbjct 9387 CAGGCCTTACATTCTCAAACGAACTTATCTGTAGGGACGAGGGCCTTCACACAGATTTTG 9328 Query 117186 CCTGTTTGCTGTT 117198 ||| || |||| Sbjct 9327 GATGTCTGTTGTT 9315 >seq492 Length=46864 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||||||||| | || ||||| || || || |||| ||||| || | Sbjct 26915 ATGCAGATTTTCGTAAAAACTTTGACAGGCAAGACAATTACACTCGAGGTCGAGCCCTCA 26856 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | ||||| |||||| ||||| | ||||| || || || || | ||||| Sbjct 26855 GATACCATTGAAAACG-TCAAGGCTAAAATCCAGGACAAGGAAGGGATTCCACCAGACCA 26797 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| ||| || || || || || || | || || || ||||| || Sbjct 26796 ACAACGTCTCATCTTCGCAGGAAAGCAACTTGAAGATGGACGAACTCTTTCAGACTATAA 26737 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| ||| | || || || |||| Sbjct 26736 CATCCAGAAAGAGTCTACTCTTCACTTAGT 26707 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||||||||| | || ||||| || || || |||| ||||| || | Sbjct 27143 ATGCAGATTTTCGTAAAAACTTTGACAGGCAAGACAATTACACTCGAGGTCGAGCCCTCA 27084 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | ||||| |||| | || |||| || || || || || || | ||||| Sbjct 27083 GATACCATTGAAAACG-TCAAAGCCAAGATTCAGGATAAGGAAGGAATTCCACCAGACCA 27025 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| ||| || || || || || || | || ||||| ||||| || Sbjct 27024 ACAACGTCTCATCTTCGCAGGAAAGCAACTTGAAGATGGACGAACCCTTTCAGACTATAA 26965 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| ||| | || || || Sbjct 26964 CATCCAGAAAGAGTCTACTCTTCA 26941 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || |||||||| | || ||||| || || || |||| ||||| || Sbjct 27374 AATATGCAGATTTTTGTAAAAACCTTGACAGGCAAGACAATTACACTCGAGGTCGAGCCC 27315 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | | | ||||| |||| | || |||| || || || || || || | || Sbjct 27314 TCAGATACCATTGAAAACG-TCAAAGCCAAGATTCAGGATAAGGAAGGAATTCCACCAGA 27256 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| ||||| || |||| ||| || || || || || || | || ||||| ||||| Sbjct 27255 CCAACAACGTCTTATCTTCGCAGGAAAGCAACTTGAAGATGGACGAACCCTTTCAGACTA 27196 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||| ||| | || || || Sbjct 27195 TAACATCCAGAAAGAGTCTACTCTTCA 27169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515206615771040