Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1005 208 7e-49 >seq1005 Length=21531 Score = 208 bits (230), Expect = 7e-49 Identities = 561/848 (66%), Gaps = 35/848 (4%) Strand=Plus/Plus Query 15963 TCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGAT 16022 |||| |||||||| || ||||| || | | |||||| | |||||||| || || | Sbjct 9052 TCTTCTCAAAGAAGTTGGTTTTGCCCTGCATTGAAATCATATCCATAAAGCTGAATGGGT 9111 Query 16023 TTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAA-TCTATCCGCCACAAAT 16081 | ||| |||| ||| | || ||||| | |||| | | |||||| || |||||| Sbjct 9112 TGGTTGTGTTGTAGTGTTTGTT-CAACCCAAGTTCAACTAGCAGTCTATCGGCAACAAAT 9170 Query 16082 TCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCT 16141 || || || || ||| | | ||||||||| || | || || | ||| ||| Sbjct 9171 TCAATGTATTGACACATGAGCACTTGGTTCATTCCAATAAGCGAGACTGGCAATGCATCT 9230 Query 16142 GTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTT 16201 |||||||| | || ||| || |||| ||||| ||| || || | | | | ||| Sbjct 9231 GTTAAAAACTCTTGTTCAATGCTAACGGCTTCTGTGACAATG---CTCA--AGATTTTTT 9285 Query 16202 AA-CGGAGGGTTTAAT----AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATC 16256 | || ||||| | | || |||||| | ||| ||||||| || | | Sbjct 9286 CCTCTGATGGTTTTCTTTGCAGGTACCTAAACAACAGACATCCAAAATCTGTGTGAAGGC 9345 Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 | |||||||||| || | |||||||| |||||||| |||||||| || |||| ||| | Sbjct 9346 CCTCGTCCCTACAGATAAGTTCGTTTGAGAATGTAAGGCCTGGCATGAGCCCTCTTTTCT 9405 Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376 | | ||| || || || ||||| || || ||||| || | ||| || | | | || |||| Sbjct 9406 TCAACCAGAAGATGGCAGCAAAGGAGCCTGAAAAAAAGACACCCTCGATTACAGCGAATG 9465 Query 16377 CAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttg 16436 || | | ||||| || | | | ||| ||||||||||||| ||||| | | Sbjct 9466 CAGCAAGACGCTCTCCAAAGCTGGCCTCCTTATCTTCTATCCATTTTAATGCCCATTGGG 9525 Query 16437 ctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGC 16496 |||| || | | |||| ||||| || | ||| || || | || | |||||| || Sbjct 9526 CTTTGCGTCTGATACAGGGAATGTTTTCAACTGCGTTGAAAAGGTAGCTCTTTTCT--GC 9583 Query 16497 T--ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCAT 16554 | ||| ||| || || ||||| | | |||||||| || ||||||||||| Sbjct 9584 TTCATCCTTAATGTATGTGTCTATCAAGAGTGAGTACATTTCACTGTGGATATTCTCCAT 9643 Query 16555 TGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC------AGAGT- 16607 || || || || || |||| | ||||| | ||| || || || | ||| Sbjct 9644 CATAATTTGGAATCCGTAGAAGCTACGTGCTTCTGGTATCTGAACCTCTTTACCAAAGTT 9703 Query 16608 AAAACCTTTCTGCTAAG-TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGT 16666 |||| | ||| ||||| || |||||||| || ||||||||||| || || Sbjct 9704 AAAAAC--------AAGATTTTCATTCACTATTCCGTCTGAGGCTGCAAAAAAGGCCAGA 9755 Query 16667 ATGTGTTTAATAAAAtttttttCGTTATCTGAAAGT---TTTAACCAGTCAGAAAAATCT 16723 |||||||| ||||||| | |||| || || ||| ||| ||||| || ||| Sbjct 9756 ATGTGTTTGATAAAATATCTTTCATTGTCATTGAGTTTGTTTTCCCAGTGCTCAATATCA 9815 Query 16724 TTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTC 16783 | | || ||| |||||||| ||||||| || || || | |||||||| ||||| ||| Sbjct 9816 TGCGCTAGATCAACCTCTTCGGCAGTCCAGAACGATGCTTCGGCCTTTTTGTACATGTTC 9875 Query 16784 CATATGTC 16791 || || || Sbjct 9876 CAAATCTC 9883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462500703144400