Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1005 158 1e-33 >seq1005 Length=21531 Score = 158 bits (174), Expect = 1e-33 Identities = 564/869 (65%), Gaps = 21/869 (2%) Strand=Plus/Plus Query 13934 TTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 || ||||||||||| ||||| || | || ||| || | |||||||| ||||| || Sbjct 9054 TTCTCAAAGAAGTTGGTTTTGCCCTGCATTGAAATCATATCCATAAAGCTGAATGGGTTG 9113 Query 13994 GTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCA 14053 |||| | | ||| | | || ||||| | ||| | |||||| |||| || ||| Sbjct 9114 GTTGTGTTGTAGTGTTTGTTCAACCCAAGTTCAACTAGCAGTCTATCGGCAACAAATTCA 9173 Query 14054 ATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTT 14113 || |||||| |||| | | ||||| || || || || || | | || ||| Sbjct 9174 ATGTATTGACACATGAGCACTTGGTTCATTCCAATAAGCGAGACTGGCAATGCATCTGTT 9233 Query 14114 AAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAA 14173 ||||| |||| ||| || || || || | | ||| || || |||| | || Sbjct 9234 AAAAACTCTTGTTCAATGCTAACGGCTTCTGTGACAATGCTCAAGATTTTTTCCTCTGAT 9293 Query 14174 GGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCT 14233 || || || | |||| | | ||| ||||||| ||||||||||| || Sbjct 9294 GGTTTTCTTTGCAGGTACCTAAACAACAGACATCCAAAATCTGTGTGAAGGCCCTCGTCC 9353 Query 14234 CTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAA 14293 |||| |||||||||||||| ||||| | |||||||| | |||| ||| || ||||| Sbjct 9354 CTACAGATAAGTTCGTTTGAGAATGTAAGGCCTGGCATGAGCCCTCTTTTCTTCAACCAG 9413 Query 14294 AATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAAT 14353 || || ||||| || || || ||||| || | ||||| | | |||| || || | Sbjct 9414 AAGATGGCAGCAAAGGAGCCTGAAAAAAAGACACCCTCGATTACAGCGAATGCAGCAAGA 9473 Query 14354 CGTTCTCCAAACGATGCTT--TTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttt 14411 || |||||||| || | || | ||| |||||||||| ||||||| | ||| Sbjct 9474 CGCTCTCCAAAGCTGGCCTCCTTATCTTC--TATCCATTTTAATGCCCATTGGGCTTTGC 9531 Query 14412 ttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT-GTTC-CTTCTCTTTAGTACT 14469 | | ||| | || |||||| || || || | | | || |||| || | || Sbjct 9532 GTCTGATACAGGGAATGTTTTCAACTGCGTTGAAAAGGTAGCTCTTTTCTGCTTCATCCT 9591 Query 14470 TGAAATGTATGTATCAAT-AAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCCATAGCT 14527 | ||||||||| || || ||| || | ||||||||| ||| || || ||||| Sbjct 9592 T--AATGTATGTGTCTATCAAG--AGTGAGTACATTTCACTGTGGATATTCTCCATCATA 9647 Query 14528 ATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCG 14587 || || || || || || | | ||||||| || |||||| ||| | Sbjct 9648 ATTTGGAATCCGTAGAAGCTACGTGCTTCTGGTATCTGAACCTCTTTACCAAAGTTAAAA 9707 Query 14588 GCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATA 14647 | | ||||||||| ||||| || || ||||||||||| |||| |||| ||| ||| Sbjct 9708 ACAAGATTTTCATTCACTATTCCGTCTGAGGCTGCAAAAAAGGCCAGAATGTGTTTGATA 9767 Query 14648 AAGTATTGCTCTTCATTG---CTGAGT---TTTTTCCAATCGGCTAAATCCTTAGAAAGA 14701 || ||| || ||||||| ||||| |||| ||| | | | ||| | | ||| Sbjct 9768 AAATAT--CT-TTCATTGTCATTGAGTTTGTTTTCCCAGTGCTCAATATCATGCGCTAGA 9824 Query 14702 TCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCT 14761 || || || || | ||||| || || | || ||||| ||||| ||| || || Sbjct 9825 TCAACCTCTTCGGCAGTCCAGAACGATGCTTCGGCCTTTTTGTACATGTTCCAAATCTCA 9884 Query 14762 TTATATAATATAGGAAAAACTACAAATCT 14790 | ||| || ||||| | |||||||| Sbjct 9885 GTGTATTTGATTGGAAACATCACAAATCT 9913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482333818708720