Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq492 104 2e-17 >seq492 Length=46864 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | |||||||| |||||| || || ||||| || ||||| ||||| | Sbjct 27145 CCACCACGCAGACGAAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAA 27204 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||| | ||| || || || ||||||| | |||||| || || Sbjct 27205 AGGGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAAGATAAGACGTTGTTGGTCTGGTGGA 27264 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||| | | || ||||| | | ||| || || ||||||| Sbjct 27265 ATTCCTTCCTTATCCTGAATCT-TGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGAC 27323 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | || || | ||||| ||||| |||||||||||||| ||||| || Sbjct 27324 CTCGAGTGTAATTGTCTTGCCTGTCAAGGTTTTTACAAAAATCTGCATATT 27374 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | |||||||| |||||| || || ||||| || ||||| ||||| | Sbjct 26917 CCACCACGCAGACGAAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAA 26976 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||| | ||| || || || |||| || | |||||| || || Sbjct 26977 AGGGTTCGTCCATCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGGA 27036 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||| | | || ||||| | | ||| || || ||||||| Sbjct 27037 ATTCCTTCCTTATCCTGAATCT-TGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGAC 27095 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || | ||||| ||||| |||||||| ||||| ||||| Sbjct 27096 CTCGAGTGTAATTGTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCAT 27143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379334966159730