Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1005 147 4e-30 seq1084 104 5e-17 seq1894 91.5 3e-13 seq732 91.5 3e-13 >seq1005 Length=21531 Score = 147 bits (162), Expect = 4e-30 Identities = 553/848 (65%), Gaps = 47/848 (6%) Strand=Plus/Minus Query 101516 TGGGAAATGTACAAAAAAGAGGTTGCCTGTTTTTGGACATTGGAAGAGATTGATTTCGAA 101575 ||| | ||||||||||| | | || | || ||||| |||||| ||||| | | Sbjct 9877 TGGAACATGTACAAAAAGGCCGAAGCATCGTTCTGGACTGCCGAAGAGGTTGATCTAGCG 9818 Query 101576 AGGGATCCTAAAGATTGGGAGAA---ACTCACTCAAGATGAGAAGGATTTCATTCTCCAG 101632 ||| | | | ||||| || ||||| | | |||| | |||| || || Sbjct 9817 CATGATATTGAGCACTGGGAAAACAAACTCAATGACAATGAAAGATATTTTATCAAACAC 9758 Query 101633 ATTCTGGCGTTCTTTGCATCCTCTGACGGAATTGTAATTGAAAATCTTAC----AACACG 101688 |||||||| || |||||| |||| |||||||| || | |||||||||| ||| Sbjct 9757 ATTCTGGCCTTTTTTGCAGCCTCAGACGGAATAGTGAATGAAAATCTTGTTTTTAACT-- 9700 Query 101689 TCTTCGTCAAGTGGCGCAGATTCCAGAAGCGAGGAGTTTCTTTGACTTCCAAGTTGGAAT 101748 || || ||| || ||||| |||||||| | || |||| | |||||| || || Sbjct 9699 --TTGGTAAAGAGGTTCAGATACCAGAAGCACGTAGCTTCTACGGATTCCAAATTATGAT 9642 Query 101749 GGAGAGTATTCATGGCAACGTCTACGGAGAACTGATTGATAGACTGGTGCCC----GACG 101804 ||||| ||| || | | | ||| | || ||||||||| | | || | Sbjct 9641 GGAGAATATCCACAGTGAAATGTACTCA---CTC-TTGATAGACACATACATTAAGGATG 9586 Query 101805 AAAAAGACAAG-GCTATCTTGTTTAACGCTGCACAACACTTCCCCGCCATCAAGAAG-AA 101862 || ||| ||| |||| ||| || ||||| | || || | ||| |||| || | || Sbjct 9585 AAGCAGAAAAGAGCTACCTT-TTCAACGCAGTTGAAAACATTCCCTGTATCA-GACGCAA 9528 Query 101863 GGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGA-------TTTGGCGGAACTAA 101915 | || ||||| | || ||||| || |||| || ||||| | | | Sbjct 9527 AGCCCAATGGGCATTAAAATGGATAGAAG---ATAAGGAGGCCAGCTTTGGAG-AGCGTC 9472 Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 ||| ||| || |||| | | || || |||| ||| || | || || |||| |||| Sbjct 9471 TTGCTGCATTCGCTGTAATCGAGGGTGTCTTTTTTTCAGGCTCCTTTGCTGCCATCTTCT 9412 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || | ||||| || || | |||| || || || | ||| || || | || | ||||| Sbjct 9411 GGTTGAAGAAAAGAGGGCTCATGCCAGGCCTTACATTCTCAAACGAACTTATCTGTAGGG 9352 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC- 102094 |||| || ||||| || |||| ||| || |||| | || || | | Sbjct 9351 ACGAGGGCCTTCACACAGATTTTGGATGTCTGTTGTTTA----GGTACCTGCAAAGAAAA 9296 Query 102095 CCATCAAGAGAAAGGATTCTTGAA-ATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 |||||| ||| || | |||||| |||||||| |||||||| | ||||||||||| || Sbjct 9295 CCATCA-GAGGAAAAAATCTTGAGCATTGTCACAGAAGCCGTTAGCATTGAACAAGAGTT 9237 Query 102154 TCTCACAGTTTCCCTGCCTGT-TAAATTAGTGGGAATGAACTGCAAGT--TGATGAGCCA 102210 | | |||| | | |||| || | ||| ||| ||||||| ||||| | ||| | || Sbjct 9236 TTTAACAGATGCATTGCCAGTCTCGCTTATTGG-AATGAAC--CAAGTGCTCATGTGTCA 9180 Query 102211 GTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAA 102270 |||||||||||||| || |||| ||| | |||||| | || | | || ||||| || Sbjct 9179 ATACATTGAATTTGTTGCCGATAGACTGCTAGTTGAACTTGGGTTGAACAAACACTACAA 9120 Query 102271 TGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTT 102330 |||||||| ||| || ||||| | ||||| | || || |||||||| || Sbjct 9119 CACAACCAACCCATTCAGCTTTATGGATATGATTTCAATGCAGGGCAAAACCAACTTCTT 9060 Query 102331 TGAAAAGA 102338 ||| |||| Sbjct 9059 TGAGAAGA 9052 >seq1084 Length=6849 Score = 104 bits (114), Expect = 5e-17 Identities = 232/344 (67%), Gaps = 12/344 (3%) Strand=Plus/Minus Query 35282 TTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGA---TACACATCTGG 35338 || ||| | ||| | || ||||||| ||| |||| |||||| ||| || ||| Sbjct 4538 TTTATCCGTGGCCAGACTGACGCCACT--ATTCTCCAA-AAGAAGGGTGTACGTATTTGG 4482 Query 35339 AACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGA 35398 ||| ||| || || || |||| | | ||||||| || || ||||| | |||| Sbjct 4481 GACGGTAACGGTTCACGTGAATATCTTGACAGTATCGGATTGCACGATCGGAGAGAGAAT 4422 Query 35399 GATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGT 35458 ||| ||||||| ||||| || |||||||||||||||||||||||| | | ||| || Sbjct 4421 GATCTGGGACCTGTATATGGTTTCCAATGGCGTCATTTTGGTGCT---CCTTACACCAGT 4365 Query 35459 TCTTCCG---ATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTG 35515 | | | ||||| | |||| ||| ||||||| | || | || | || | | Sbjct 4364 TGTGATGTGAATTATTCAGGAATGGGATATGATCAACTTGCGCACATTATCAACAAGATC 4305 Query 35516 AGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCAC 35575 ||| || || | ||| | | | || || | || ||||| ||| ||| | || Sbjct 4304 AGATCCAACCCGTACGATCGCCGACTAATCCTGTCAGCCTGGAACCCTGCCGATTTGCAT 4245 Query 35576 CTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 ||||||| || ||||||||||| ||| |||||| || ||||| Sbjct 4244 ATTATGGCACTACCTCCATGCCATATGTTTGCTCAGTTCTATGT 4201 >seq1894 Length=33155 Score = 91.5 bits (100), Expect = 3e-13 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 94821 CTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCA 94880 || ||| || |||||||| |||||||| ||||||||||| | |||| | ||||| Sbjct 22884 CTGCTTTAGTGTATCATAGATACCCTCTATGCTATCATCACTCATTGCCAGCAAAAAGCA 22943 Query 94881 CGAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAA 94940 ||| || ||||| || | |||||| | ||||| ||||| || || ||||| || || Sbjct 22944 CGATGAGAGTTGTGGCCGGTTTGTTCCCGAGTTAAATAGTGTTGGTGATGCATGTGT-AA 23002 Query 94941 ATAG-TGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAA 94999 |||| || |||||| | | ||||||||| || | | | |||||| |||||| | Sbjct 23003 ATAGCCGCTGCGACATCATGTTATATGTTTCTATTGCTGCCTCAATGTCTTCTCCGTGTA 23062 Query 95000 TGCC 95003 | || Sbjct 23063 TTCC 23066 >seq732 Length=14862 Score = 91.5 bits (100), Expect = 3e-13 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 94821 CTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCA 94880 || ||| || |||||||| |||||||| ||||||||||| | |||| | ||||| Sbjct 9601 CTGCTTTAGTGTATCATAGATACCCTCTATGCTATCATCACTCATTGCCAGCAAAAAGCA 9660 Query 94881 CGAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAA 94940 ||| || ||||| || | |||||| | ||||| ||||| || || ||||| || || Sbjct 9661 CGATGAGAGTTGTGGCCGGTTTGTTCCCGAGTTAAATAGTGTTGGTGATGCATGTGT-AA 9719 Query 94941 ATAG-TGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAA 94999 |||| || |||||| | | ||||||||| || | | | |||||| |||||| | Sbjct 9720 ATAGCCGCTGCGACATCATGTTATATGTTTCTATTGCTGCCTCAATGTCTTCTCCGTGTA 9779 Query 95000 TGCC 95003 | || Sbjct 9780 TTCC 9783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989559225146070