Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1005 244 1e-59 seq1894 141 1e-28 seq732 141 1e-28 >seq1005 Length=21531 Score = 244 bits (270), Expect = 1e-59 Identities = 590/881 (67%), Gaps = 24/881 (3%) Strand=Plus/Plus Query 33312 TTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 33371 || || || || || ||||| || | || ||| || | ||||| || || || ||| Sbjct 9054 TTCTCAAAGAAGTTGGTTTTGCCCTGCATTGAAATCATATCCATAAAGCTGAATGGGTTG 9113 Query 33372 GTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCT 33431 || ||||| ||| || || || | |||| | || |||||| || || ||||| Sbjct 9114 GTTGTGTTGTAGTGTTTGTTCAACCCAAGTTCAACTAGCAGTCTATCGGCAACAAATTCA 9173 Query 33432 ATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTA 33491 || ||| ||| | | |||||||| || || ||||| | || | || Sbjct 9174 ATGTATTGACACATGAGCACTTGGTTCATTCCAATAAGCGAGACTGGCAATGCATCTGTT 9233 Query 33492 AGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTC 33551 | ||| |||||||||||| || || | ||| | ||| || | | ||| ||| ||| Sbjct 9234 AAAAACTCTTGTTCAATGCTAACGGCTTCTGTGACAATG---CTCAAGATTTTTTC-CTC 9289 Query 33552 GG-TGGATGTAATAAATGTT---TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTC 33607 | ||| | | | | | |||||| || |||| | ||||| ||| || ||||| Sbjct 9290 TGATGGTTTTCTTTGCAGGTACCTAAACAACAGACATCCAAAATCTGTGTGAAGGCCCTC 9349 Query 33608 GTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAG 33667 ||| |||| || | |||||| || || || || || ||||| || || | || || | Sbjct 9350 GTCCCTACAGATAAGTTCGTTTGAGAATGTAAGGCCTGGCATGAGCCCTCTTTTCTTCAA 9409 Query 33668 CCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAAT 33727 ||| || |||| ||| || || || ||||| |||| || || | | |||| || ||| Sbjct 9410 CCAGAAGATGGCAGCAAAGGAGCCTGAAAAAAAGACACCCTCGATTACAGCGAATGCAGC 9469 Query 33728 AAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTT 33784 ||| | ||||||| | | ||| | || | |||||| ||| ||||| | ||| || Sbjct 9470 AAGACGCTCTCCAAAGCTGGCCTCCTTATCTTCTATCCATTTTAATGCCCATTGGGCTTT 9529 Query 33785 CTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT--A 33842 | | | ||| || || |||| | || || || || ||| | ||||| | || | Sbjct 9530 GCGTCTGATACAGGGAATGTTTTCAACTGCGTTGAAAAGGTAGCTCTTTTC--TGCTTCA 9587 Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || |||| || || || ||||| || |||||||| || || || || || Sbjct 9588 TCCTTAATGTATGTGTCTATCAAGAGTGAGTACATTTCACTGTGGATATTCTCCATCATA 9647 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 || || ||||||||||| | | || || | ||||| || ||| ||| ||| ||| Sbjct 9648 ATTTGGAATCCGTAGAAGCTACGTGCTTCTGGTATCTGAACCTCTTTACCAAA--GTTAA 9705 Query 33963 G--CTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTA 34020 | | |||||||||||||||||| || |||||||||||| |||| | ||||| | Sbjct 9706 AAACAAGATTTTCATTCACTATTCCGTCTGAGGCTGCAAAAAAGGCCAGAATGTGTTTGA 9765 Query 34021 TAAAATATTTTTC---GTC-TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATA 34076 |||||||| |||| ||| | | ||| |||| | ||| | | ||||| | | || | Sbjct 9766 TAAAATATCTTTCATTGTCATTGAGTTTGTTT-TCCCAGTGCTCAATATCATGCGCTAGA 9824 Query 34077 TCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCA 34136 || || ||||| | ||||| || ||||| || |||||||| ||||| ||||| || ||| Sbjct 9825 TCAACCTCTTCGGCAGTCCAGAACGATGCTTCGGCCTTTTTGTACATGTTCCAAATCTCA 9884 Query 34137 TGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 34177 |||| |||||| || || |||||||| || || ||||| Sbjct 9885 GTGTATTTGATTGGAAACATCACAAATCTGTTGGGGTTTGG 9925 >seq1894 Length=33155 Score = 141 bits (156), Expect = 1e-28 Identities = 602/939 (64%), Gaps = 19/939 (2%) Strand=Plus/Plus Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 ||||||| ||||||||| || || || | || | | |||| | |||||| || || Sbjct 22249 GATGCCAAATTACACACAGCCACTTCGTCAGGTGCAGTGTATTCCACTATCTCCGTACAC 22308 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 | || || | ||| || || || | || || || || ||| |||| |||||||| Sbjct 22309 AAGTTGCTGCTCTTTATTGTGCCCAGGTTCTGCTGGTTTGACTTGCTGTTGCACGCATCT 22368 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128 || || | ||| |||| || || ||||| || || || |||| ||| || | ||| | Sbjct 22369 TTGTACAACATGTATGGCGTGCCTGTTTCTATTTGTGAATCTAAAATTGCATACCACAGT 22428 Query 63129 ACTCGAGCCTTTATTATAGATTTGTATC---TCCTT-TCTCTTT-CGTATAGAGTATACA 63183 | |||| || | | ||| | | |||| | | ||| | ||| || |||| Sbjct 22429 TGTTGAGCTGGTACTCTC--TTTCTGGCGAGTCCTGGTGTATTTTCATATTTTGTGTACA 22486 Query 63184 ATCGTTCGAACTCGTCTCCCCAAACAT-TGTCCAATCTAGGACATTCATCCGGACACATC 63242 || ||||| |||||||| || | || || | | | | ||| || || | Sbjct 22487 GCTTCTCAAACTCATCTCCCCACACCTCTGAGAGATTTGGCGCCT-CATGTGGGCAAAAT 22545 Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302 | ||||| ||||||| ||| ||||| ||||| || ||||| |||||||| | | Sbjct 22546 AGAGACCATTCTCCGTTTTCCAAAACTCGCTTCATGAACAGATCGGGAATCCACATTCC- 22604 Query 63303 ATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63361 ||| || | ||| | || | | || || || || |||||| || ||| ||||| Sbjct 22605 ATAGAACAAATCACGTGCGCGGTTCTCTTCCTTACCGTGATTCTTCTTCAGACTAAGGAA 22664 Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421 | | | ||| | ||||| || ||||| ||||| || | | || || | ||||| Sbjct 22665 ATCAAACACATCTGCGTGCCATGGCTCCAAATATATAGCAAATGCACCTGGTCTCTTGTT 22724 Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 ||| ||||| || | ||||| || || | || | || | || |||||| | | || Sbjct 22725 TCCACCCTGGTCAACATATCTGGCAGTCTGGTTGAATACACGCAGCATTGGTACTACTCC 22784 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATT----ACTAA 63537 || ||| | ||||| || || | || || ||| |||| | || || || | Sbjct 22785 ATTAGATGTTCCATTTGTTCCTGCAATGTAAGATCCTGTGGCTCTGATGTTGTGTAC-AC 22843 Query 63538 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCAT 63597 | || || ||||| ||||| ||| || || | || || | |||| || |||| Sbjct 22844 TCAAT---CCAATTCCACCTGCTGATTTTGATATCATGGCACACTGCTTTAGTGTATCAT 22900 Query 63598 AGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63657 |||| || |||||||||||||| |||| || | ||| || || | ||| | | Sbjct 22901 AGATACCCTCTATGCTATCATCACTCATTGCCAGCAAAAAGCACGATGAGAGTTGTGGCC 22960 Query 63658 GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 63717 | | ||||||| ||||||| || || || || || ||||| | || | | Sbjct 22961 GGTTTGTTCCCGAGTTAAATAGTGTTGGTGATGCATGTGTAAATAGCCGCTGCGACATCA 23020 Query 63718 GATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 63777 || || || || || |||| || || || | || ||||| | ||| | || Sbjct 23021 TGTTATATGTTTCTATTGCTGCCTCAATGTCTTCTCCGTGTATTCCAAGACTGACTCTCA 23080 Query 63778 TTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63837 | || | | ||| ||||| || || | |||| ||||| | |||||||||| || | Sbjct 23081 TCAAAAGATACTGTGGTCTCTCTACCACTTTGCCGTTTACTCTCAACAAGTATGAGCGCT 23140 Query 63838 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63876 | | ||||| ||||| ||||||||||| ||| |||| Sbjct 23141 CGAGTGTTTTGAAACCGAAATAGTTGTACCCAAAATCTC 23179 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 62379 GGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAC 62438 ||||| || || ||||| || |||| |||||| | || ||||| || || ||||| || Sbjct 21604 GGGTTTACCACCTGGAACTCACCAGCCAATACACGGCGGGTGTATATGTTGCTGGTGTAT 21663 Query 62439 GGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 62498 || || | |||||||| ||| | ||| || | ||||||||||| |||||||||||| Sbjct 21664 GGCTCAAAGCACTCATTAAATCCGAGAATCTGTGAGGTTGATGCAGTAGGCATAGGTGCC 21723 Query 62499 ACCA 62502 | || Sbjct 21724 ATCA 21727 >seq732 Length=14862 Score = 141 bits (156), Expect = 1e-28 Identities = 602/939 (64%), Gaps = 19/939 (2%) Strand=Plus/Plus Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 ||||||| ||||||||| || || || | || | | |||| | |||||| || || Sbjct 8966 GATGCCAAATTACACACAGCCACTTCGTCAGGTGCAGTGTATTCCACTATCTCCGTACAC 9025 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 | || || | ||| || || || | || || || || ||| |||| |||||||| Sbjct 9026 AAGTTGCTGCTCTTTATTGTGCCCAGGTTCTGCTGGTTTGACTTGCTGTTGCACGCATCT 9085 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128 || || | ||| |||| || || ||||| || || || |||| ||| || | ||| | Sbjct 9086 TTGTACAACATGTATGGCGTGCCTGTTTCTATTTGTGAATCTAAAATTGCATACCACAGT 9145 Query 63129 ACTCGAGCCTTTATTATAGATTTGTATC---TCCTT-TCTCTTT-CGTATAGAGTATACA 63183 | |||| || | | ||| | | |||| | | ||| | ||| || |||| Sbjct 9146 TGTTGAGCTGGTACTCTC--TTTCTGGCGAGTCCTGGTGTATTTTCATATTTTGTGTACA 9203 Query 63184 ATCGTTCGAACTCGTCTCCCCAAACAT-TGTCCAATCTAGGACATTCATCCGGACACATC 63242 || ||||| |||||||| || | || || | | | | ||| || || | Sbjct 9204 GCTTCTCAAACTCATCTCCCCACACCTCTGAGAGATTTGGCGCCT-CATGTGGGCAAAAT 9262 Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302 | ||||| ||||||| ||| ||||| ||||| || ||||| |||||||| | | Sbjct 9263 AGAGACCATTCTCCGTTTTCCAAAACTCGCTTCATGAACAGATCGGGAATCCACATTCC- 9321 Query 63303 ATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63361 ||| || | ||| | || | | || || || || |||||| || ||| ||||| Sbjct 9322 ATAGAACAAATCACGTGCGCGGTTCTCTTCCTTACCGTGATTCTTCTTCAGACTAAGGAA 9381 Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421 | | | ||| | ||||| || ||||| ||||| || | | || || | ||||| Sbjct 9382 ATCAAACACATCTGCGTGCCATGGCTCCAAATATATAGCAAATGCACCTGGTCTCTTGTT 9441 Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 ||| ||||| || | ||||| || || | || | || | || |||||| | | || Sbjct 9442 TCCACCCTGGTCAACATATCTGGCAGTCTGGTTGAATACACGCAGCATTGGTACTACTCC 9501 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATT----ACTAA 63537 || ||| | ||||| || || | || || ||| |||| | || || || | Sbjct 9502 ATTAGATGTTCCATTTGTTCCTGCAATGTAAGATCCTGTGGCTCTGATGTTGTGTAC-AC 9560 Query 63538 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCAT 63597 | || || ||||| ||||| ||| || || | || || | |||| || |||| Sbjct 9561 TCAAT---CCAATTCCACCTGCTGATTTTGATATCATGGCACACTGCTTTAGTGTATCAT 9617 Query 63598 AGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63657 |||| || |||||||||||||| |||| || | ||| || || | ||| | | Sbjct 9618 AGATACCCTCTATGCTATCATCACTCATTGCCAGCAAAAAGCACGATGAGAGTTGTGGCC 9677 Query 63658 GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 63717 | | ||||||| ||||||| || || || || || ||||| | || | | Sbjct 9678 GGTTTGTTCCCGAGTTAAATAGTGTTGGTGATGCATGTGTAAATAGCCGCTGCGACATCA 9737 Query 63718 GATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 63777 || || || || || |||| || || || | || ||||| | ||| | || Sbjct 9738 TGTTATATGTTTCTATTGCTGCCTCAATGTCTTCTCCGTGTATTCCAAGACTGACTCTCA 9797 Query 63778 TTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63837 | || | | ||| ||||| || || | |||| ||||| | |||||||||| || | Sbjct 9798 TCAAAAGATACTGTGGTCTCTCTACCACTTTGCCGTTTACTCTCAACAAGTATGAGCGCT 9857 Query 63838 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63876 | | ||||| ||||| ||||||||||| ||| |||| Sbjct 9858 CGAGTGTTTTGAAACCGAAATAGTTGTACCCAAAATCTC 9896 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 62379 GGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAC 62438 ||||| || || ||||| || |||| |||||| | || ||||| || || ||||| || Sbjct 8321 GGGTTTACCACCTGGAACTCACCAGCCAATACACGGCGGGTGTATATGTTGCTGGTGTAT 8380 Query 62439 GGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 62498 || || | |||||||| ||| | ||| || | ||||||||||| |||||||||||| Sbjct 8381 GGCTCAAAGCACTCATTAAATCCGAGAATCTGTGAGGTTGATGCAGTAGGCATAGGTGCC 8440 Query 62499 ACCA 62502 | || Sbjct 8441 ATCA 8444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629802216705120