Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1005 235 7e-57 >seq1005 Length=21531 Score = 235 bits (260), Expect = 7e-57 Identities = 579/870 (67%), Gaps = 20/870 (2%) Strand=Plus/Plus Query 35888 TTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTG 35947 || || || || || ||||| || | | ||| || | ||||| || |||||| ||| Sbjct 9054 TTCTCAAAGAAGTTGGTTTTGCCCTGCATTGAAATCATATCCATAAAGCTGAATGGGTTG 9113 Query 35948 ATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCT 36007 | || || ||| || || || | |||| | || |||||| || |||||||| Sbjct 9114 GTTGTGTTGTAGTGTTTGTTCAACCCAAGTTCAACTAGCAGTCTATCGGCAACAAATTCA 9173 Query 36008 ATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTA 36067 || ||| ||| | | |||||||| ||||| ||||| | || | || Sbjct 9174 ATGTATTGACACATGAGCACTTGGTTCATTCCAATAAGCGAGACTGGCAATGCATCTGTT 9233 Query 36068 AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTC 36127 | ||| ||||||||||| || || ||||| | ||| | | | |||| || Sbjct 9234 AAAAACTCTTGTTCAATGCTAACGGCTTCTGTGACAATGCTCAAGATTTTTTCCTCTGAT 9293 Query 36128 GGTGGATACAATAAATGTT--TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGT 36185 ||| | | | | || |||||| || |||| | ||||| ||| || ||||||| Sbjct 9294 GGTT--TTCTTTGCAGGTACCTAAACAACAGACATCCAAAATCTGTGTGAAGGCCCTCGT 9351 Query 36186 CTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCC 36245 | |||| || | |||||| || || || || || ||||| || || | || || | || Sbjct 9352 CCCTACAGATAAGTTCGTTTGAGAATGTAAGGCCTGGCATGAGCCCTCTTTTCTTCAACC 9411 Query 36246 AAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAA 36305 | || |||| ||||| || || ||||| || | || || | | | || || ||| || Sbjct 9412 AGAAGATGGCAGCAAAGGAGCCTGAAAAAAAGACACCCTCGATTACAGCGAATGCAGCAA 9471 Query 36306 GTCTCTCTCCATAACCGGCAC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCT 36362 | | ||||||| | | ||| | || | |||||| ||| ||||| | ||| || Sbjct 9472 GACGCTCTCCAAAGCTGGCCTCCTTATCTTCTATCCATTTTAATGCCCATTGGGCTTTGC 9531 Query 36363 TTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACT--ATC 36420 | | | ||| || || | || | || || || || ||| | ||||| | || ||| Sbjct 9532 GTCTGATACAGGGAATGTTTTCAACTGCGTTGAAAAGGTAGCTCTTTTC--TGCTTCATC 9589 Query 36421 TTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCAT 36480 |||| ||||| || ||||| || |||||||| || || || || || || Sbjct 9590 CTTAATGTATGTGTCTATCAAGAGTGAGTACATTTCACTGTGGATATTCTCCATCATAAT 9649 Query 36481 TTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTG- 36539 ||| ||||||||||| | | || || | ||||| || ||| ||| ||| ||| Sbjct 9650 TTGGAATCCGTAGAAGCTACGTGCTTCTGGTATCTGAACCTCTTTACCAAA--GTTAAAA 9707 Query 36540 -CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 36598 | | ||||||||||||||||||||| |||||||||||| |||| | ||||| ||| Sbjct 9708 ACAAGATTTTCATTCACTATTCCGTCTGAGGCTGCAAAAAAGGCCAGAATGTGTTTGATA 9767 Query 36599 AAATATTTTTCGTT----TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATC 36654 |||||| |||| || | | ||| |||| | ||| | | ||||| | | || ||| Sbjct 9768 AAATATCTTTCATTGTCATTGAGTTTGTTT-TCCCAGTGCTCAATATCATGCGCTAGATC 9826 Query 36655 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 36714 || ||||| | ||||| || ||||| || |||||||| ||||| ||||| || ||| Sbjct 9827 AACCTCTTCGGCAGTCCAGAACGATGCTTCGGCCTTTTTGTACATGTTCCAAATCTCAGT 9886 Query 36715 ATATTGAATTGGAAAAATAACAAATCTATT 36744 |||| |||||||| || |||||||| || Sbjct 9887 GTATTTGATTGGAAACATCACAAATCTGTT 9916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658156724129360