Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq492 113 4e-20 seq1005 111 2e-19 >seq492 Length=46864 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | |||||||||| ||||||||||| || |||||||| || Sbjct 26689 CCACCACGCAGACGAAGTACTAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAA 26748 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| || || || || || |||| |||||||| || || || || Sbjct 26749 AGAGTTCGTCCA-TCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGG 26807 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| |||||| || | | ||| | || || | |||||| || Sbjct 26808 AATCCCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGCTCGAC 26867 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | |||||||| ||||| ||||||||||| || |||||| Sbjct 26868 CTCGAGTGTAATTGTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCATA 26916 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| ||||||||||| || |||||||| || Sbjct 26917 CCACCACGCAGACGAAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAA 26976 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| || || || || || |||| |||||||| || || || || Sbjct 26977 AGGGTTCGTCCA-TCTTCAAGTTGCTTTCCTGCGAAGATGAGACGTTGTTGGTCTGGTGG 27035 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCA 139715 || ||||| || || ||| | || | ||| | || || || | || | |||||| | Sbjct 27036 AATTCCTTCCTTATCC-TGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGA 27094 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | |||||||| ||||| ||||||||||| || |||||| Sbjct 27095 CCTCGAGTGTAATTGTCTTGCCTGTCAAAGTTTTTACGAAAATCTGCATA 27144 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| ||||||||||| || |||||||| || Sbjct 27145 CCACCACGCAGACGAAGTACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGAA 27204 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| || || || || || |||| |||||||| || || || || Sbjct 27205 AGGGTTCGTCCA-TCTTCAAGTTGCTTTCCTGCGAAGATAAGACGTTGTTGGTCTGGTGG 27263 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| || || ||| | || | ||| | | ||| | || || | |||||| | Sbjct 27264 AATTCCTTCCTTATC-CTGAATCTTGGCTTTGACGTTTTCAATGGTATCTGAGGGCTCGA 27322 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | |||||||| ||||| |||||||| || || |||||| Sbjct 27323 CCTCGAGTGTAATTGTCTTGCCTGTCAAGGTTTTTACAAAAATCTGCATA 27372 >seq1005 Length=21531 Score = 111 bits (122), Expect = 2e-19 Identities = 313/472 (66%), Gaps = 9/472 (2%) Strand=Plus/Minus Query 52576 TGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTT 52635 |||||||| |||||||| ||| | | | |||| |||| || ||||| | || || Sbjct 9520 TGGGCATTAAAATGGATAGAAGATAAGGAGGCCAGCTTTGGAGAGCGTCTTGCTGCATTC 9461 Query 52636 GCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AAC 52694 ||| || | || ||||| |||||||| || ||||| || || || | | || || Sbjct 9460 GCTGTAATCGAGGGTGTCTTTTTTTCAGGCTCCTTTGCTGCCATCTTCTGGTTGAAGAAA 9401 Query 52695 CTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAAT 52754 |||| | ||||| ||||| || || ||||| | || | | ||||| || | Sbjct 9400 AGAGGGC-TCATGCCAGGCCTTACATTCTCAAACGAACTTATCTGTAGGGACGAGGGCCT 9342 Query 52755 GCACACAGATTTTGCGTGTTTGTATTATA-ATACGCGCGTTAAAGAAAAATTGTCATATG 52813 ||||||||||||| ||| ||| | || ||| || |||| |||| ||| | | Sbjct 9341 TCACACAGATTTTGGATGTCTGTTGTTTAGGTACCTGC---AAAG-AAAACCATCAGAGG 9286 Query 52814 AAAAAATTCTAGA-CATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGAC 52872 |||||| ||| || ||| | | ||| ||||| ||||||| |||||||||| || || Sbjct 9285 AAAAAA-TCTTGAGCATTGTCACAGAAGCCGTTAGCATTGAACAAGAGTTTTTAACAGAT 9227 Query 52873 GCTTTACCCGTATCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTT 52932 || || || || || | | || |||||| | ||||| | ||||| || ||| Sbjct 9226 GCATTGCCAGTCTCGCTTATTGGAATGAACCAAGTGCTCATGTGTCAATACATTGAATTT 9167 Query 52933 GTTGCGGACAGACTGTTGATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCC 52992 ||||| || |||||| | | | || || | ||| |||| || | ||||| Sbjct 9166 GTTGCCGATAGACTGCTAGTTGAACTTGGGTTGAACAAACACTACAACACAACCAACCCA 9107 Query 52993 TTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGA 53044 || |||||| | | || || | |||||||||| ||||| || |||| Sbjct 9106 TTCAGCTTTATGGATATGATTTCAATGCAGGGCAAAACCAACTTCTTTGAGA 9055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496051883636800