Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1005 268 1e-66 seq1894 147 3e-30 seq732 147 3e-30 >seq1005 Length=21531 Score = 268 bits (296), Expect = 1e-66 Identities = 594/880 (68%), Gaps = 22/880 (3%) Strand=Plus/Plus Query 49690 TTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 49749 || || || || || ||||| || | || ||| || | ||||| || || || ||| Sbjct 9054 TTCTCAAAGAAGTTGGTTTTGCCCTGCATTGAAATCATATCCATAAAGCTGAATGGGTTG 9113 Query 49750 GTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCT 49809 || || || ||| || || || | |||| | || |||||| || |||||||| Sbjct 9114 GTTGTGTTGTAGTGTTTGTTCAACCCAAGTTCAACTAGCAGTCTATCGGCAACAAATTCA 9173 Query 49810 ATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTA 49869 || ||| ||| | | |||||||| ||||| ||||| | || | || Sbjct 9174 ATGTATTGACACATGAGCACTTGGTTCATTCCAATAAGCGAGACTGGCAATGCATCTGTT 9233 Query 49870 AGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTC 49929 | ||| |||||||||||| || || ||||| | ||| || | | ||| ||| ||| Sbjct 9234 AAAAACTCTTGTTCAATGCTAACGGCTTCTGTGACAATG---CTCAAGATTTTTTC-CTC 9289 Query 49930 GG-TGGATG-CAATAAATGTT--TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTC 49985 | ||| | | | | || |||||| || |||| | ||||| ||| || ||||| Sbjct 9290 TGATGGTTTTCTTTGCAGGTACCTAAACAACAGACATCCAAAATCTGTGTGAAGGCCCTC 9349 Query 49986 GTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAG 50045 ||| |||| || |||||||| || || || || || ||||| || || | || || | Sbjct 9350 GTCCCTACAGATAAGTTCGTTTGAGAATGTAAGGCCTGGCATGAGCCCTCTTTTCTTCAA 9409 Query 50046 CCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAAC 50105 ||| || |||| ||||| || || ||||| |||| || || | | | || || ||| | Sbjct 9410 CCAGAAGATGGCAGCAAAGGAGCCTGAAAAAAAGACACCCTCGATTACAGCGAATGCAGC 9469 Query 50106 AAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTT 50162 ||| | ||||||| | ||||| | || | |||||| ||| ||||| | ||| || Sbjct 9470 AAGACGCTCTCCAAAGCTGGCCTCCTTATCTTCTATCCATTTTAATGCCCATTGGGCTTT 9529 Query 50163 CTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT--A 50220 | | | ||| || || |||| | || || || || ||| | ||||| | || | Sbjct 9530 GCGTCTGATACAGGGAATGTTTTCAACTGCGTTGAAAAGGTAGCTCTTTTC--TGCTTCA 9587 Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 || |||| || || || ||||| || |||||||| || || || || || Sbjct 9588 TCCTTAATGTATGTGTCTATCAAGAGTGAGTACATTTCACTGTGGATATTCTCCATCATA 9647 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTT-- 50338 || || ||||||||||| | | || || | ||||| || ||| ||| ||| ||| Sbjct 9648 ATTTGGAATCCGTAGAAGCTACGTGCTTCTGGTATCTGAACCTCTTTACCAAA--GTTAA 9705 Query 50339 CAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 50398 | | | ||||||||||||||||||||| |||||||||||| |||| | ||||| | Sbjct 9706 AAACAAGATTTTCATTCACTATTCCGTCTGAGGCTGCAAAAAAGGCCAGAATGTGTTTGA 9765 Query 50399 TAAAATGTTTTTCGTTGGGTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATAT 50455 |||||| | |||| ||| | ||||| || ||| | | ||||| | | || || Sbjct 9766 TAAAATATCTTTCATTGTCATTGAGTTTGTTTTCCCAGTGCTCAATATCATGCGCTAGAT 9825 Query 50456 CTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 50515 | || ||||| | ||||| || ||||| || |||||||| ||||| ||||| || ||| Sbjct 9826 CAACCTCTTCGGCAGTCCAGAACGATGCTTCGGCCTTTTTGTACATGTTCCAAATCTCAG 9885 Query 50516 GATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 50555 |||| |||||| || || |||||||| || || ||||| Sbjct 9886 TGTATTTGATTGGAAACATCACAAATCTGTTGGGGTTTGG 9925 >seq1894 Length=33155 Score = 147 bits (162), Expect = 3e-30 Identities = 600/938 (64%), Gaps = 17/938 (2%) Strand=Plus/Plus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 ||||||| |||||| || || || || | || | | |||| | ||| || || || Sbjct 22249 GATGCCAAATTACACACAGCCACTTCGTCAGGTGCAGTGTATTCCACTATCTCCGTACAC 22308 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740 | ||| || | ||| || || || | || || || || ||| |||| |||||||| Sbjct 22309 AAGTTGCTGCTCTTTATTGTGCCCAGGTTCTGCTGGTTTGACTTGCTGTTGCACGCATCT 22368 Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 79800 || || | ||| | || || || ||||| || || || |||| ||| || | ||| | Sbjct 22369 TTGTACAACATGTATGGCGTGCCTGTTTCTATTTGTGAATCTAAAATTGCATACCACAGT 22428 Query 79801 ACTCGAGC-----CTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATA 79855 | |||| || | || | | || || | | | |||| |||| ||| || | Sbjct 22429 TGTTGAGCTGGTACTCTCTTTCTGGCGAGTC-CTGGTGTAT-TTTCATATTTTGTGTACA 22486 Query 79856 ATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCA 79915 || ||||| |||||||| || || | || || | || || | | Sbjct 22487 GCTTCTCAAACTCATCTCCCCACACCTCTGAGAGATTTGGCGCCTCATGTGGGCAAAATA 22546 Query 79916 ACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 79975 ||||| ||||| | ||| ||||| ||||| || ||||| |||||||| | | | Sbjct 22547 GAGACCATTCTCCGTTTTCCAAAACTCGCTTCATGAACAGATCGGGAATCCACATTCC-A 22605 Query 79976 TA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034 || || | ||| | | | | ||| || || || |||||| || ||| ||||| Sbjct 22606 TAGAACAAATCACGTGCGCGGTTCTCTTCCTTACCGTGATTCTTCTTCAGACTAAGGAAA 22665 Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094 | | | ||| | ||||| || ||||| ||||| || | | || |||| |||||| Sbjct 22666 TCAAACACATCTGCGTGCCATGGCTCCAAATATATAGCAAATGCACCTGGTCTCTTGTTT 22725 Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || ||||| || | ||||| || || | || | || | || |||||| | | ||| Sbjct 22726 CCACCCTGGTCAACATATCTGGCAGTCTGGTTGAATACACGCAGCATTGGTACTACTCCA 22785 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT----ACTAAT 80210 || ||||| ||||| || || | || || ||| |||| | || || || | | Sbjct 22786 TTAGATGTTCCATTTGTTCCTGCAATGTAAGATCCTGTGGCTCTGATGTTGTGTAC-ACT 22844 Query 80211 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 80270 || || ||||| ||||| ||| || || | || || | |||| |||||||| Sbjct 22845 CAAT---CCAATTCCACCTGCTGATTTTGATATCATGGCACACTGCTTTAGTGTATCATA 22901 Query 80271 GATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 80330 ||| |||||||||||||||||| |||| || | ||| || || | ||| | || Sbjct 22902 GATACCCTCTATGCTATCATCACTCATTGCCAGCAAAAAGCACGATGAGAGTTGTGGCCG 22961 Query 80331 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAG 80390 | ||||||| ||||||| || || || || || ||||| | |||| | Sbjct 22962 GTTTGTTCCCGAGTTAAATAGTGTTGGTGATGCATGTGTAAATAGCCGCTGCGACATCAT 23021 Query 80391 ATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCAT 80450 || || || || || |||| || || || | || ||||| | ||| | ||| Sbjct 23022 GTTATATGTTTCTATTGCTGCCTCAATGTCTTCTCCGTGTATTCCAAGACTGACTCTCAT 23081 Query 80451 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTC 80510 || | | ||| ||||| || || | ||| |||| | |||||||||| || || Sbjct 23082 CAAAAGATACTGTGGTCTCTCTACCACTTTGCCGTTTACTCTCAACAAGTATGAGCGCTC 23141 Query 80511 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 80548 | ||||| ||||| ||||||||||| ||| |||| Sbjct 23142 GAGTGTTTTGAAACCGAAATAGTTGTACCCAAAATCTC 23179 >seq732 Length=14862 Score = 147 bits (162), Expect = 3e-30 Identities = 600/938 (64%), Gaps = 17/938 (2%) Strand=Plus/Plus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 ||||||| |||||| || || || || | || | | |||| | ||| || || || Sbjct 8966 GATGCCAAATTACACACAGCCACTTCGTCAGGTGCAGTGTATTCCACTATCTCCGTACAC 9025 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740 | ||| || | ||| || || || | || || || || ||| |||| |||||||| Sbjct 9026 AAGTTGCTGCTCTTTATTGTGCCCAGGTTCTGCTGGTTTGACTTGCTGTTGCACGCATCT 9085 Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 79800 || || | ||| | || || || ||||| || || || |||| ||| || | ||| | Sbjct 9086 TTGTACAACATGTATGGCGTGCCTGTTTCTATTTGTGAATCTAAAATTGCATACCACAGT 9145 Query 79801 ACTCGAGC-----CTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATA 79855 | |||| || | || | | || || | | | |||| |||| ||| || | Sbjct 9146 TGTTGAGCTGGTACTCTCTTTCTGGCGAGTC-CTGGTGTAT-TTTCATATTTTGTGTACA 9203 Query 79856 ATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCA 79915 || ||||| |||||||| || || | || || | || || | | Sbjct 9204 GCTTCTCAAACTCATCTCCCCACACCTCTGAGAGATTTGGCGCCTCATGTGGGCAAAATA 9263 Query 79916 ACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 79975 ||||| ||||| | ||| ||||| ||||| || ||||| |||||||| | | | Sbjct 9264 GAGACCATTCTCCGTTTTCCAAAACTCGCTTCATGAACAGATCGGGAATCCACATTCC-A 9322 Query 79976 TA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034 || || | ||| | | | | ||| || || || |||||| || ||| ||||| Sbjct 9323 TAGAACAAATCACGTGCGCGGTTCTCTTCCTTACCGTGATTCTTCTTCAGACTAAGGAAA 9382 Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094 | | | ||| | ||||| || ||||| ||||| || | | || |||| |||||| Sbjct 9383 TCAAACACATCTGCGTGCCATGGCTCCAAATATATAGCAAATGCACCTGGTCTCTTGTTT 9442 Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || ||||| || | ||||| || || | || | || | || |||||| | | ||| Sbjct 9443 CCACCCTGGTCAACATATCTGGCAGTCTGGTTGAATACACGCAGCATTGGTACTACTCCA 9502 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT----ACTAAT 80210 || ||||| ||||| || || | || || ||| |||| | || || || | | Sbjct 9503 TTAGATGTTCCATTTGTTCCTGCAATGTAAGATCCTGTGGCTCTGATGTTGTGTAC-ACT 9561 Query 80211 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 80270 || || ||||| ||||| ||| || || | || || | |||| |||||||| Sbjct 9562 CAAT---CCAATTCCACCTGCTGATTTTGATATCATGGCACACTGCTTTAGTGTATCATA 9618 Query 80271 GATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 80330 ||| |||||||||||||||||| |||| || | ||| || || | ||| | || Sbjct 9619 GATACCCTCTATGCTATCATCACTCATTGCCAGCAAAAAGCACGATGAGAGTTGTGGCCG 9678 Query 80331 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAG 80390 | ||||||| ||||||| || || || || || ||||| | |||| | Sbjct 9679 GTTTGTTCCCGAGTTAAATAGTGTTGGTGATGCATGTGTAAATAGCCGCTGCGACATCAT 9738 Query 80391 ATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCAT 80450 || || || || || |||| || || || | || ||||| | ||| | ||| Sbjct 9739 GTTATATGTTTCTATTGCTGCCTCAATGTCTTCTCCGTGTATTCCAAGACTGACTCTCAT 9798 Query 80451 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTC 80510 || | | ||| ||||| || || | ||| |||| | |||||||||| || || Sbjct 9799 CAAAAGATACTGTGGTCTCTCTACCACTTTGCCGTTTACTCTCAACAAGTATGAGCGCTC 9858 Query 80511 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 80548 | ||||| ||||| ||||||||||| ||| |||| Sbjct 9859 GAGTGTTTTGAAACCGAAATAGTTGTACCCAAAATCTC 9896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718251256284560