Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1005 158 1e-33 >seq1005 Length=21531 Score = 158 bits (174), Expect = 1e-33 Identities = 564/869 (65%), Gaps = 21/869 (2%) Strand=Plus/Plus Query 13602 TTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 || ||||||||||| ||||| || | || ||| || | |||||||| ||||| || Sbjct 9054 TTCTCAAAGAAGTTGGTTTTGCCCTGCATTGAAATCATATCCATAAAGCTGAATGGGTTG 9113 Query 13662 ATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCA 13721 ||| | | ||| | | || ||||| | ||| | |||||| |||| ||| ||| Sbjct 9114 GTTGTGTTGTAGTGTTTGTTCAACCCAAGTTCAACTAGCAGTCTATCGGCAACAAATTCA 9173 Query 13722 ATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTT 13781 || |||||| |||| | | ||||| || || || || || | | || ||| Sbjct 9174 ATGTATTGACACATGAGCACTTGGTTCATTCCAATAAGCGAGACTGGCAATGCATCTGTT 9233 Query 13782 AAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAA 13841 ||||| |||| ||| || || || ||| | | ||| | || | || | || Sbjct 9234 AAAAACTCTTGTTCAATGCTAACGGCTTCTGTGACAATGCTCAAGATTTTTTCCTCTGAT 9293 Query 13842 GGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCT 13901 || || || | |||| | | ||| ||||||| ||||||||||| || Sbjct 9294 GGTTTTCTTTGCAGGTACCTAAACAACAGACATCCAAAATCTGTGTGAAGGCCCTCGTCC 9353 Query 13902 CTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAA 13961 |||| |||||||||||||| ||||| | |||||||| | |||| ||| || ||||| Sbjct 9354 CTACAGATAAGTTCGTTTGAGAATGTAAGGCCTGGCATGAGCCCTCTTTTCTTCAACCAG 9413 Query 13962 AATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAAT 14021 || || |||||||| || || ||||| || | ||||| | | |||| || || | Sbjct 9414 AAGATGGCAGCAAAGGAGCCTGAAAAAAAGACACCCTCGATTACAGCGAATGCAGCAAGA 9473 Query 14022 CGTTCTCCAAACGATGCTT--TTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttt 14079 || |||||||| || | || | ||| |||||||||| ||||||| | ||| Sbjct 9474 CGCTCTCCAAAGCTGGCCTCCTTATCTTC--TATCCATTTTAATGCCCATTGGGCTTTGC 9531 Query 14080 ttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCT--TTAGTACT 14137 | | ||| | || |||||| || || || | || ||| ||| || | || Sbjct 9532 GTCTGATACAGGGAATGTTTTCAACTGCGTTGAAAAGGTAGCTCTTTTCTGCTTCATCCT 9591 Query 14138 TGAAATGTATGTATCAAT-AAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCCATAGCT 14195 | ||||||||| || || ||| || | ||||||||| ||| || || ||||| Sbjct 9592 T--AATGTATGTGTCTATCAAG--AGTGAGTACATTTCACTGTGGATATTCTCCATCATA 9647 Query 14196 ATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCG 14255 || || || || || |||| | ||||| | || || || ||| | Sbjct 9648 ATTTGGAATCCGTAGAAGCTACGTGCTTCTGGTATCTGAACCTCTTTACCAAAGTTAAAA 9707 Query 14256 GCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATA 14315 | | ||||||||| ||||| || || ||||||||||| |||| |||| ||| ||| Sbjct 9708 ACAAGATTTTCATTCACTATTCCGTCTGAGGCTGCAAAAAAGGCCAGAATGTGTTTGATA 9767 Query 14316 AAGTATTGCTCTTCATTG---TTGAGTT--TTTTCCAATCGGATAA-ATCCTTAGAAAGA 14369 || ||| || ||||||| ||||||| |||||| | | || ||| | | ||| Sbjct 9768 AAATAT--CT-TTCATTGTCATTGAGTTTGTTTTCCCAGTGCTCAATATCATGCGCTAGA 9824 Query 14370 TCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCT 14429 || || || || | ||||| || || | || ||||| ||||| ||| || || Sbjct 9825 TCAACCTCTTCGGCAGTCCAGAACGATGCTTCGGCCTTTTTGTACATGTTCCAAATCTCA 9884 Query 14430 TTATATAATATAGGAAAAACTACAAATCT 14458 | ||| || ||||| | |||||||| Sbjct 9885 GTGTATTTGATTGGAAACATCACAAATCT 9913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479716282643600