Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zancudomyces_20culisetae_20[genbank_20GCA_5F001969505.1_202017-01- 25] 1,954 sequences; 28,700,372 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1005 154 1e-32 >seq1005 Length=21531 Score = 154 bits (170), Expect = 1e-32 Identities = 563/868 (65%), Gaps = 19/868 (2%) Strand=Plus/Plus Query 13390 TTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 || ||||| ||||| ||||| || | || ||| || | |||||||| |||||| || Sbjct 9054 TTCTCAAAGAAGTTGGTTTTGCCCTGCATTGAAATCATATCCATAAAGCTGAATGGGTTG 9113 Query 13450 GTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCA 13509 |||| | | ||| | | || ||||| | || | |||||| |||| ||| ||| Sbjct 9114 GTTGTGTTGTAGTGTTTGTTCAACCCAAGTTCAACTAGCAGTCTATCGGCAACAAATTCA 9173 Query 13510 ATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTT 13569 || |||||| |||| | | ||||| || || || || || | | || ||| Sbjct 9174 ATGTATTGACACATGAGCACTTGGTTCATTCCAATAAGCGAGACTGGCAATGCATCTGTT 9233 Query 13570 AAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAA 13629 ||||| |||| ||| || || || || | | ||| || || | || | || Sbjct 9234 AAAAACTCTTGTTCAATGCTAACGGCTTCTGTGACAATGCTCAAGATTTTTTCCTCTGAT 9293 Query 13630 GGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCT 13689 || || || | |||| | | ||| ||||||| ||||||||||| || Sbjct 9294 GGTTTTCTTTGCAGGTACCTAAACAACAGACATCCAAAATCTGTGTGAAGGCCCTCGTCC 9353 Query 13690 CTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAA 13749 |||| |||||||||||||| ||||| | |||||||| | |||| ||| || ||||| Sbjct 9354 CTACAGATAAGTTCGTTTGAGAATGTAAGGCCTGGCATGAGCCCTCTTTTCTTCAACCAG 9413 Query 13750 AATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGT 13809 || || ||||| || || || ||||| || | ||||| | | |||| || || || Sbjct 9414 AAGATGGCAGCAAAGGAGCCTGAAAAAAAGACACCCTCGATTACAGCGAATGCAGCAAGA 9473 Query 13810 CGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAttttttt 13869 || |||||||| || | || | | |||||||||| ||||||| | ||| | Sbjct 9474 CGCTCTCCAAAGCTGGCCTCCTTATCTTCTATCCATTTTAATGCCCATTGGGCTTTGCGT 9533 Query 13870 ttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT-GTTC-CTTCTCTTTAGTACTTG 13927 | ||| | || |||| | ||| ||||| | | | || |||| || | ||| Sbjct 9534 CTGATACAGGGAATGTTTTCAACTGCGTTGAAAAGGTAGCTCTTTTCTGCTTCATCCTT- 9592 Query 13928 AAATGTATGTATCAAT-AAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCTATAGCTAT 13985 ||||||||| || || ||| || | ||||||||| ||| || || || || || Sbjct 9593 -AATGTATGTGTCTATCAAG--AGTGAGTACATTTCACTGTGGATATTCTCCATCATAAT 9649 Query 13986 CTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGC 14045 || || || || || | | ||||||| || ||||| ||| || Sbjct 9650 TTGGAATCCGTAGAAGCTACGTGCTTCTGGTATCTGAACCTCTTTACCAAA-GTTAAAAA 9708 Query 14046 CAAG-TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14104 |||| |||||||| || || || || ||||||||||| |||| |||| ||| |||| Sbjct 9709 CAAGATTTTCATTCACTATTCCGTCTGAGGCTGCAAAAAAGGCCAGAATGTGTTTGATAA 9768 Query 14105 AGTATTGCTCTTCATTG---TTGAGT---TTTTTCCAATCGGCTAAATCCTTAGAAAGAT 14158 | ||| || ||||||| |||||| |||| ||| | | | ||| | | |||| Sbjct 9769 AATAT--CT-TTCATTGTCATTGAGTTTGTTTTCCCAGTGCTCAATATCATGCGCTAGAT 9825 Query 14159 CTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTT 14218 | || || || | ||||| || || | || ||||| ||||| ||| || || Sbjct 9826 CAACCTCTTCGGCAGTCCAGAACGATGCTTCGGCCTTTTTGTACATGTTCCAAATCTCAG 9885 Query 14219 TATATAATATAGGAAAAACTACAAATCT 14246 | ||| || ||||| | |||||||| Sbjct 9886 TGTATTTGATTGGAAACATCACAAATCT 9913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478577110468560